X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP92911uL 10 mg/mL TrtA + 1 uL 26% w/v PEG6000, 0.1 M Bis-Tris propane, 30 mM biuret, pH 9
Crystal Properties
Matthews coefficientSolvent content
2.1542.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.63α = 90
b = 114.18β = 90
c = 141.47γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-04-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-B0.992APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7857.0999.80.06212.443.8580968
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.781.8899.90.3694.263.77

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 6XIX1.7857.0980968404999.9280.1570.15570.187227.334
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.077-1.1022.178
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.407
r_dihedral_angle_4_deg18.523
r_dihedral_angle_3_deg12.863
r_dihedral_angle_1_deg6.519
r_lrange_it6.51
r_lrange_other6.407
r_scangle_it5.693
r_scangle_other5.693
r_scbond_it3.85
r_scbond_other3.85
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.407
r_dihedral_angle_4_deg18.523
r_dihedral_angle_3_deg12.863
r_dihedral_angle_1_deg6.519
r_lrange_it6.51
r_lrange_other6.407
r_scangle_it5.693
r_scangle_other5.693
r_scbond_it3.85
r_scbond_other3.85
r_mcangle_it2.968
r_mcangle_other2.968
r_mcbond_it2.277
r_mcbond_other2.259
r_angle_refined_deg1.703
r_angle_other_deg1.468
r_symmetry_xyhbond_nbd_refined0.235
r_nbd_refined0.21
r_nbd_other0.204
r_symmetry_nbd_other0.189
r_nbtor_refined0.158
r_xyhbond_nbd_refined0.155
r_symmetry_nbd_refined0.155
r_chiral_restr0.094
r_symmetry_nbtor_other0.083
r_gen_planes_other0.014
r_bond_refined_d0.012
r_gen_planes_refined0.01
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6698
Nucleic Acid Atoms
Solvent Atoms412
Heterogen Atoms27

Software

Software
Software NamePurpose
REFMACrefinement
Cootmodel building
XDSdata scaling
MOLREPphasing
XDSdata reduction