Data From External Resources Integrated Into RCSB PDB

Resource Home URL Type of Data
BindingDB Binding affinities
Binding MOAD Binding affinities
BiGG Reconstruction of metabolic pathways
BMRB BMRB-to-PDB mappings
Catalytic Site Atlas Active sites and catalytic residues in enzymes
CATH Protein structure classification
DrugBank Drug and drug target data
PDBflex Protein structure flexibility
ExPASy Enzyme classification
Gencode Gene structure data
Gene Ontology Biological ontologies
HMMER3 Sequence similarity searches
Human Gene Nomenclature Committee Human gene name nomenclature and genomic information
Immune Epitope Database Antibody and T cell epitopes
LS-SNP Single Nucleotide Polymorphisms
NDB Experimentally-determined nucleic acids and complex assemblies
EMDB 3DEM density maps and associated metadata
mpstruc Classification of transmembrane protein structures in PDB
NCBI Gene Gene info, reference sequences, et al.
NCBI Taxonomy Organism Classification
OLDERADO NMR domain composition and clustering
OPM Orientation of transmembrane proteins
PDBbind-CN Binding affinities
Pfam Protein families
PhospoSitePlus Mammalian post-translational modifications Diffraction images
Protein Model Portal Homology models
PubMed Citation information
PubMedCentral Open access literature
Recon3D A 3-Dimensional View of Human Metabolism and Disease
RECOORD NMR structure ensembles
RESID Protein modifications
SBGrid Structural Biology Data Grid / diffraction images
SCOP Structural Classification of Proteins
SCOPe Structural Classification of Proteins — extended
SIFTS Structure, function, taxonomy, sequence
Store.Synchrotron Data Store Diffraction images
Transporter Classification Database Classification of membrane transport proteins
UniProt Protein sequences and annotations
UCSC genome browser Human genome data
Pharos - Illuminating the Druggable Genome (NIH Common Fund Data Resource) Drug targets and diseases
Genotype-Tissue Expression - GTEx (NIH Common Fund Data Resource) Tissue-specific gene expression data
International Mouse Phenotyping Consortium - IMPC (NIH Common Fund Data Resource) Mouse gene phenotype data