6YJD

Lamin A coil2 dimer stabilized by N-terminal capping


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.304 
  • R-Value Work: 0.253 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Addressing the Molecular Mechanism of Longitudinal Lamin Assembly Using Chimeric Fusions.

Stalmans, G.Lilina, A.V.Vermeire, P.J.Fiala, J.Novak, P.Strelkov, S.V.

(2020) Cells 9

  • DOI: https://doi.org/10.3390/cells9071633
  • Primary Citation of Related Structures:  
    6YF5, 6YJD, 6YSH

  • PubMed Abstract: 

    The molecular architecture and assembly mechanism of intermediate filaments have been enigmatic for decades. Among those, lamin filaments are of particular interest due to their universal role in cell nucleus and numerous disease-related mutations. Filament assembly is driven by specific interactions of the elementary dimers, which consist of the central coiled-coil rod domain flanked by non-helical head and tail domains. We aimed to investigate the longitudinal 'head-to-tail' interaction of lamin dimers (the so-called A CN interaction), which is crucial for filament assembly. To this end, we prepared a series of recombinant fragments of human lamin A centred around the N- and C-termini of the rod. The fragments were stabilized by fusions to heterologous capping motifs which provide for a correct formation of parallel, in-register coiled-coil dimers. As a result, we established crystal structures of two N-terminal fragments one of which highlights the propensity of the coiled-coil to open up, and one C-terminal rod fragment. Additional studies highlighted the capacity of such N- and C-terminal fragments to form specific complexes in solution, which were further characterized using chemical cross-linking. These data yielded a molecular model of the A CN complex which features a 6.5 nm overlap of the rod ends.


  • Organizational Affiliation

    Laboratory for Biocrystallography, KU Leuven, 3000 Leuven, Belgium.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid assembly scaffolding protein,Prelamin-A/C127Salasvirus phi29Homo sapiens
This entity is chimeric
Mutation(s): 1 
UniProt & NIH Common Fund Data Resources
Find proteins for P13848 (Bacillus phage phi29)
Explore P13848 
Go to UniProtKB:  P13848
Find proteins for P02545 (Homo sapiens)
Explore P02545 
Go to UniProtKB:  P02545
PHAROS:  P02545
GTEx:  ENSG00000160789 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP02545P13848
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.304 
  • R-Value Work: 0.253 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 117.25α = 90
b = 117.25β = 90
c = 93.156γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
Auto-Rickshawphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
KU LeuvenBelgiumCELSA 18/044

Revision History  (Full details and data files)

  • Version 1.0: 2021-02-24
    Type: Initial release