5CAE
Succinate bound to pig GTP-specific succinyl-CoA synthetase
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Succinyl-CoA synthetase domain-like | 8057677 | 3000003 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | CoA-binding Rossmann-fold domain | 8057675 | 3000049 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8058550 | 3000094 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Succinyl-CoA synthetase domain-like | 8058552 | 3000003 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CoA_binding | e5caeA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: CoA_binding | ECOD (1.6) |
A | Succ_CoA_lig | e5caeA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Succinyl-CoA synthetase domains (From Topology) | T: Succinyl-CoA synthetase domains | F: Succ_CoA_lig | ECOD (1.6) |
B | ATP-grasp_2 | e5caeB2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: ATP-grasp_2 | ECOD (1.6) |
B | Citrate_bind | e5caeB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Succinyl-CoA synthetase domains (From Topology) | T: Succinyl-CoA synthetase domains | F: Citrate_bind | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
A | 3.40.50.261 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Succinyl-CoA synthetase domains | CATH (4.3.0) |
B | 3.30.470.20 | Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase | Chain A, domain 1 | CATH (4.3.0) |
B | 3.30.1490.20 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
B | 3.40.50.261 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Succinyl-CoA synthetase domains | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02629 | CoA binding domain (CoA_binding) | CoA binding domain | This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. | Domain | |
PF00549 | CoA-ligase (Ligase_CoA) | CoA-ligase | This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilise ATP others use GTP. | Domain | |
PF08442 | ATP-grasp domain (ATP-grasp_2) | ATP-grasp domain | - | Domain | |
PF00549 | CoA-ligase (Ligase_CoA) | CoA-ligase | This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilise ATP others use GTP. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016102 | Succinyl-CoA synthetase-like | Homologous Superfamily | |
IPR017440 | ATP-citrate lyase/succinyl-CoA ligase, active site | Active Site | |
IPR033847 | ATP-citrate lyase/succinyl-CoA ligase, conserved site | Conserved Site | |
IPR003781 | CoA-binding | Domain | |
IPR036291 | NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR005810 | Succinyl-CoA ligase, alpha subunit | Family | |
IPR005811 | ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain | Domain | |
IPR013815 | ATP-grasp fold, subdomain 1 | Homologous Superfamily | |
IPR016102 | Succinyl-CoA synthetase-like | Homologous Superfamily | |
IPR013650 | ATP-grasp fold, succinyl-CoA synthetase-type | Domain | |
IPR017866 | Succinyl-CoA synthetase, beta subunit, conserved site | Conserved Site | |
IPR034722 | Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial | Family | |
IPR005811 | ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain | Domain | |
IPR005809 | Succinate--CoA ligase-like, beta subunit | Family |