1BJO
THE STRUCTURE OF PHOSPHOSERINE AMINOTRANSFERASE FROM E. COLI IN COMPLEX WITH ALPHA-METHYL-L-GLUTAMATE
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Protein Modification Annotation
- Structure Motif: Primary M-CSA Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1bjoa_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | GABA-aminotransferase-like | Phosphoserine aminotransferase, PSAT | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1bjob_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | GABA-aminotransferase-like | Phosphoserine aminotransferase, PSAT | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Aminotran_5_C_1 | e1bjoA2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_5_C_1 | ECOD (1.6) |
A | UNK_F_TYPE | e1bjoA3 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: UNK_F_TYPE | ECOD (1.6) |
B | Aminotran_5_C_1 | e1bjoB2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_5_C_1 | ECOD (1.6) |
B | UNK_F_TYPE | e1bjoB3 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
A | 3.90.1150.10 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) |
B | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
B | 3.90.1150.10 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00266 | Aminotransferase class-V (Aminotran_5) | Aminotransferase class-V | This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. | Domain | |
PF00266 | Aminotransferase class-V (Aminotran_5) | Aminotransferase class-V | This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020578 | Aminotransferase class-V, pyridoxal-phosphate binding site | Binding Site | |
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily | |
IPR022278 | Phosphoserine aminotransferase | Family | |
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR000192 | Aminotransferase class V domain | Domain | |
IPR020578 | Aminotransferase class-V, pyridoxal-phosphate binding site | Binding Site | |
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily | |
IPR022278 | Phosphoserine aminotransferase | Family | |
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR000192 | Aminotransferase class V domain | Domain |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
phosphoserine transaminase M-CSA #424 | A pyridoxal-phosphate-dependent enzyme. It catalyses the second step in the phosphorylated pathway of serine biosynthesis in Escherichia coli (the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine). It also catalyses the third step in the biosynthesis of the coenzyme pyridoxal 5'-phosphate in E. coli (the reversible conversion of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine). | Defined by 3 residues: TRP:A-100 [auth A-102]ASP:A-172 [auth A-174]LYS:A-196 [auth A-198] | EC: 2.6.1.52 (PDB Primary Data) |