Data From External Resources Integrated Into RCSB PDB

ATC Anatomical Therapeutic Chemical (ATC) Classification System from World Health Organization
Binding MOADBinding affinities
BindingDBBinding affinities
BMRBBMRB-to-PDB mappings
Catalytic Site AtlasActive sites and catalytic residues in enzymes
CATHProtein structure classification
CCDCThe Cambridge Crystallographic Data Centre
ChEBIChemical entities of biological interest
ChEMBLManually curated database of bioactive molecules with drug-like properties
Crystallographic Open DatabaseOpen-access collection of crystal structures of organic, inorganic, metal-organics compounds and minerals, excluding biopolymers.
DrugBankDrug and drug target data
ECODEvolutionary Classification of Protein Domains
EMDB3DEM density maps and associated metadata
Expasy Enzyme classification
GencodeGene structure data
Gene OntologyGene structure data
Genotype-Tissue Expression - GTEx (NIH Common Fund Data Resource)Tissue-specific gene expression data
GlyCosmos A web portal aiming to integrate the glycosciences with the life sciences about genes, proteins, lipids, pathways and diseases.
GlyGenA data integration and dissemination resource for carbohydrate and glycoconjugate related data which provides computational and informatics resources and tools for glycosciences research.
GlyTouCanAn international glycan structure repository with unique accession code for each unique glycan.
HMMER3Sequence similarity searches
Human Gene Nomenclature CommitteeHuman gene name nomenclature and genomic information
IMGTThe international ImMunoGeneTics information system
Immune Epitope DatabaseAntibody and T cell epitopes
International Mouse Phenotyping Consortium - IMPC (NIH Common Fund Data Resource)Mouse gene phenotype data
MemProtMDAnnotation of transmembrane protein structures
mpstrucClassification of transmembrane protein structures
NCBI GeneGene info, reference sequences, et al.
NCBI TaxonomyOrganism Classification
NDBExperimentally-determined nucleic acids and complex assemblies
OLDERADONMR domain composition and clustering
OPMClassification of transmembrane protein structures and membrane segments
PDBbind-CNBinding affinities
PDBflexProtein structure flexibility
PDBTMAnnotation of transmembrane protein structures and membrane segments
PfamProtein families
Pharos - Illuminating the Druggable Genome (NIH Common Fund Data Resource)Drug targets and diseases
PhospoSitePlusMammalian post-translational modifications
Protein Model PortalHomology models
ProteinDiffraction.org Diffraction images
PubChemChemical information
PubMedCitation information
PubMedCentralOpen access literature
Recon3DA 3-Dimensional View of Human Metabolism and Disease
RECOORD NMR structure ensembles
RESIDProtein modifications
SAbDabThe Structural Antibody Database
SBGridStructural Biology Data Grid / diffraction images
SCOPStructural Classification of Proteins
SCOPeStructural Classification of Proteins — extended
SIFTSStructure, function, taxonomy, sequence
UCSC genome browserHuman genome data
UniProtProtein sequences and annotations


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Last updated: 7/5/2022