Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1dcea1 All alpha proteins alpha-alpha superhelix Protein prenylyltransferase Protein prenylyltransferase Rab geranylgeranyltransferase alpha-subunit, N-terminal domain (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Ad1dcea2 All beta proteins C2 domain-like Rab geranylgeranyltransferase alpha-subunit, insert domain Rab geranylgeranyltransferase alpha-subunit, insert domain Rab geranylgeranyltransferase alpha-subunit, insert domain (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Ad1dcea3 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Rab geranylgeranyltransferase alpha-subunit, C-terminal domain Rab geranylgeranyltransferase alpha-subunit, C-terminal domain (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Cd1dcec1 All alpha proteins alpha-alpha superhelix Protein prenylyltransferase Protein prenylyltransferase Rab geranylgeranyltransferase alpha-subunit, N-terminal domain (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Cd1dcec2 All beta proteins C2 domain-like Rab geranylgeranyltransferase alpha-subunit, insert domain Rab geranylgeranyltransferase alpha-subunit, insert domain Rab geranylgeranyltransferase alpha-subunit, insert domain (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Cd1dcec3 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Rab geranylgeranyltransferase alpha-subunit, C-terminal domain Rab geranylgeranyltransferase alpha-subunit, C-terminal domain (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Bd1dceb_ All alpha proteins alpha/alpha toroid Terpenoid cyclases/Protein prenyltransferases Protein prenyltransferases Rab geranylgeranyltransferase, beta subunit (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Dd1dced_ All alpha proteins alpha/alpha toroid Terpenoid cyclases/Protein prenyltransferases Protein prenyltransferases Rab geranylgeranyltransferase, beta subunit (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyProtein prenylyltransferase 8026258 4001331 SCOP2 (2022-06-29)
ASCOP2 Familyrab geranylgeranyltransferase alpha-subunit, insert domain 8028351 4002262 SCOP2 (2022-06-29)
ASCOP2 FamilyRab geranylgeranyltransferase alpha-subunit, C-terminal domain 8031611 4003537 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyProtein prenylyltransferase 8038637 3001312 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRab geranylgeranyltransferase alpha-subunit, insert domain 8040730 3001017 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyL domain-like 8043989 3001010 SCOP2 (2022-06-29)
CSCOP2B SuperfamilyL domain-like 8043989 3001010 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRab geranylgeranyltransferase alpha-subunit, insert domain 8040730 3001017 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyProtein prenylyltransferase 8038637 3001312 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyProtein prenylyltransferase 8038637 3001312 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTerpenoid cyclases/Protein prenyltransferases 8040875 3001024 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyTerpenoid cyclases/Protein prenyltransferases 8040875 3001024 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARabGGT_inserte1dceA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: RabGGT_insertECOD (1.6)
ALRR_9e1dceA3 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_9ECOD (1.6)
APPTAe1dceA2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PPTAECOD (1.6)
CRabGGT_inserte1dceC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: RabGGT_insertECOD (1.6)
CLRR_9e1dceC3 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_9ECOD (1.6)
CPPTAe1dceC2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PPTAECOD (1.6)
BSQHop_cyclase_Ce1dceB1 A: alpha superhelicesX: Repetitive alpha hairpinsH: alpha/alpha toroid (From Topology)T: alpha/alpha toroidF: SQHop_cyclase_CECOD (1.6)
DSQHop_cyclase_Ce1dceD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: alpha/alpha toroid (From Topology)T: alpha/alpha toroidF: SQHop_cyclase_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF01239Protein prenyltransferase alpha subunit repeat (PPTA)Protein prenyltransferase alpha subunit repeat- Repeat
A, C
PF07711Rab geranylgeranyl transferase alpha-subunit, insert domain (RabGGT_insert)Rab geranylgeranyl transferase alpha-subunit, insert domainRab geranylgeranyl transferase (RabGGT) catalyses the addition of two geranylgeranyl groups to the C-terminal cysteine residues of Rab proteins, which is crucial for membrane association and function of these proteins in intracellular vesicular traff ...Rab geranylgeranyl transferase (RabGGT) catalyses the addition of two geranylgeranyl groups to the C-terminal cysteine residues of Rab proteins, which is crucial for membrane association and function of these proteins in intracellular vesicular trafficking [1]. This domain is inserted between Pfam:PF01239 repeats. This domain adopts an Ig-like fold and is thought to be involved in protein-protein interactions and might be involved in the recognition and binding of REP [1].
Domain
B, D
PF00432Prenyltransferase and squalene oxidase repeat (Prenyltrans)Prenyltransferase and squalene oxidase repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C
PROTEIN (RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT)
B, D
PROTEIN (RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT)

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, C
FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891