Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Jd1fkaj_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Kd1fkak_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Ld1fkal_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Md1fkam_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Nd1fkan_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Od1fkao_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Pd1fkap_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Qd1fkaq_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Rd1fkar_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Sd1fkas_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Bd1fkab_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Td1fkat_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Cd1fkac_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Dd1fkad_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Ed1fkae_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Fd1fkaf_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Gd1fkag_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Hd1fkah_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)
Id1fkai_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit Prokaryotic (30S subunit) (Thermus thermophilus ) [TaxId: 274 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
SSCOP2B SuperfamilyRibosomal protein S19 8044027 3000686 SCOP2B (2021-05-27)
ESCOP2B SuperfamilydsRNA-binding domain-like 8044017 3000985 SCOP2B (2021-05-27)
ESCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8044015 3000100 SCOP2B (2021-05-27)
GSCOP2B SuperfamilyRibosomal protein S7 8033523 3000799 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
OPF00312e1fkaO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
RPF01084e1fkaR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
SPF00203e1fkaS1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
DPF00163,PF01479e1fkaD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
EPF03719e1fkaE2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
EPF00333e1fkaE1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
FPF01250e1fkaF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
GPF00177e1fkaG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
HPF00410e1fkaH1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
HPF00410e1fkaH2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
16S RIBOSOMAL RNA---
30S RIBOSOMAL PROTEIN S10---
30S RIBOSOMAL PROTEIN S11---
30S RIBOSOMAL PROTEIN S12---
30S RIBOSOMAL PROTEIN S13---
30S RIBOSOMAL PROTEIN S14---
30S RIBOSOMAL PROTEIN S15
30S RIBOSOMAL PROTEIN S16---
30S RIBOSOMAL PROTEIN S17---
30S RIBOSOMAL PROTEIN S18
30S RIBOSOMAL PROTEIN S19
30S RIBOSOMAL PROTEIN S2---
30S RIBOSOMAL PROTEIN S20---
30S RIBOSOMAL PROTEIN S3---
30S RIBOSOMAL PROTEIN S4
30S RIBOSOMAL PROTEIN S5
30S RIBOSOMAL PROTEIN S6
30S RIBOSOMAL PROTEIN S7
30S RIBOSOMAL PROTEIN S8
30S RIBOSOMAL PROTEIN S9---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR000589Small ribosomal subunit protein uS15Family
IPR001648Small ribosomal subunit protein bS18Family
IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
IPR002222Small ribosomal subunit protein uS19Family
IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IPR002942RNA-binding S4 domainDomain
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
IPR022801Small ribosomal subunit protein uS4Family
IPR000851Small ribosomal subunit protein uS5Family
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
IPR000529Small ribosomal subunit protein bS6Family
IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
IPR000235Small ribosomal subunit protein uS7Family
IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
IPR023798Small ribosomal subunit protein uS7 domainDomain
IPR000630Small ribosomal subunit protein uS8Family
IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily