1G8J
CRYSTAL STRUCTURE ANALYSIS OF ARSENITE OXIDASE FROM ALCALIGENES FAECALIS
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8033012 | 3001453 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ADC-like | 8042518 | 3001132 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ADC-like | 8042518 | 3001132 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8033012 | 3001453 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ISP domain | 8041549 | 3000233 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ISP domain | 8041549 | 3000233 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Molydop_binding | e1g8jA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
A | Molybdop_Fe4S4,arsenite_ox_L | e1g8jA4 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4,arsenite_ox_L | ECOD (1.6) |
A | Molybdopterin_2nd | e1g8jA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
A | Molybdopterin_1st_1 | e1g8jA3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_1st_1 | ECOD (1.6) |
C | Molydop_binding | e1g8jC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
C | Molybdop_Fe4S4,arsenite_ox_L | e1g8jC4 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4,arsenite_ox_L | ECOD (1.6) |
C | Molybdopterin_2nd | e1g8jC2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
C | Molybdopterin_1st_1 | e1g8jC3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_1st_1 | ECOD (1.6) |
B | arsenite_ox_S | e1g8jB1 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: arsenite_ox_S | ECOD (1.6) |
B | Rieske_4 | e1g8jB2 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: Rieske_4 | ECOD (1.6) |
D | arsenite_ox_S | e1g8jD1 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: arsenite_ox_S | ECOD (1.6) |
D | Rieske_4 | e1g8jD2 | A: few secondary structure elements | X: Trm112p-like (From Topology) | H: Trm112p-like (From Topology) | T: Trm112p-like | F: Rieske_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.200.200 | Alpha Beta | 2-Layer Sandwich | Phosphorylase Kinase | domain 1 | CATH (4.3.0) |
A | 3.40.50.740 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A | 3.40.228.10 | Alpha Beta | 3-Layer(aba) Sandwich | Dimethylsulfoxide Reductase | domain 2 | CATH (4.3.0) |
A | 2.40.40.20 | Mainly Beta | Beta Barrel | Barwin-like endoglucanases | CATH (4.3.0) | |
C | 3.30.200.200 | Alpha Beta | 2-Layer Sandwich | Phosphorylase Kinase | domain 1 | CATH (4.3.0) |
C | 3.40.50.740 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
C | 3.40.228.10 | Alpha Beta | 3-Layer(aba) Sandwich | Dimethylsulfoxide Reductase | domain 2 | CATH (4.3.0) |
C | 2.40.40.20 | Mainly Beta | Beta Barrel | Barwin-like endoglucanases | CATH (4.3.0) | |
B | 2.102.10.10 | Mainly Beta | 3-layer Sandwich | Rieske Iron-sulfur Protein | Rieske [2Fe-2S] iron-sulphur domain | CATH (4.3.0) |
D | 2.102.10.10 | Mainly Beta | 3-layer Sandwich | Rieske Iron-sulfur Protein | Rieske [2Fe-2S] iron-sulphur domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01568 | Molydopterin dinucleotide binding domain (Molydop_binding) | Molydopterin dinucleotide binding domain | This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entir ... | Domain | |
PF18465 | Rieske 3Fe-4S (Rieske_3) | Rieske 3Fe-4S | This domain is comprised of the iron-sulphur cluster and Rieske subunit found in the large subunit of arsenite oxidase. Arsenite oxidase is a 100 kDa molybdenum- and iron-sulfur-containing protein located on the outer surface of the inner membrane of ... | Domain | |
PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | - | Family | |
PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain |