1J5A | pdb_00001j5a

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth K]	d1j5ak_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Large subunit	Prokaryotic (50S subunit)	(Deinococcus radiodurans ) [TaxId: 1299 ],	SCOPe (2.08)
C [auth L]	d1j5al_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Large subunit	Prokaryotic (50S subunit)	(Deinococcus radiodurans ) [TaxId: 1299 ],	SCOPe (2.08)
D [auth M]	d1j5am_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Large subunit	Prokaryotic (50S subunit)	(Deinococcus radiodurans ) [TaxId: 1299 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth K]	SCOP2B Superfamily	Ribosomal protein L4	8038546	3001146	SCOP2B (2022-06-29)
C [auth L]	SCOP2B Superfamily	Ribosomal protein L22	8038576	3001078	SCOP2B (2022-06-29)
D [auth M]	SCOP2B Superfamily	Zn-binding ribosomal proteins	8038593	3001320	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth K]	Ribosomal_L4	e1j5aK1	A: a/b three-layered sandwiches	X: Ribosomal protein L4 (From Topology)	H: Ribosomal protein L4 (From Topology)	T: Ribosomal protein L4	F: Ribosomal_L4	ECOD (1.6)
C [auth L]	Ribosomal_L22	e1j5aL1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Ribosomal protein L22 (From Topology)	T: Ribosomal protein L22	F: Ribosomal_L22	ECOD (1.6)
D [auth M]	Ribosomal_L32p	e1j5aM1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Ribosomal_L32p	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth K]	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
C [auth L]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
D [auth M]	PF01783	Ribosomal L32p protein family (Ribosomal_L32p)	Ribosomal L32p protein family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	23S RRNA	-	-	-
B [auth K]	RIBOSOMAL PROTEIN L4	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
C [auth L]	RIBOSOMAL PROTEIN L22	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
D [auth M]	RIBOSOMAL PROTEIN L32	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding RNA binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth K]	IPR013005	Large ribosomal subunit protein uL4-like	Family
B [auth K]	IPR002136	Large ribosomal subunit protein uL4	Family
B [auth K]	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
C [auth L]	IPR047867	Large ribosomal subunit protein uL22, bacterial/organelle-type	Family
C [auth L]	IPR018260	Large ribosomal subunit protein uL22, conserved site	Conserved Site
C [auth L]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
C [auth L]	IPR001063	Large ribosomal subunit protein uL22	Family
C [auth L]	IPR005727	Large ribosomal subunit protein uL22, bacterial/chloroplast-type	Family
D [auth M]	IPR002677	Large ribosomal subunit protein bL32	Family
D [auth M]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
D [auth M]	IPR044957	Large ribosomal subunit protein bL32, bacterial type	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.