2PHN
Crystal structure of an amide bond forming F420-gamma glutamyl ligase from Archaeoglobus fulgidus
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d2phnb_ | Alpha and beta proteins (a+b) | CofE-like | CofE-like | CofE-like | F420-0:gamma-glutamyl ligase CofE | (Archaeoglobus fulgidus DSM 4304 ) [TaxId: 224325 ], | SCOPe (2.08) |
A | d2phna_ | Alpha and beta proteins (a+b) | CofE-like | CofE-like | CofE-like | F420-0:gamma-glutamyl ligase CofE | (Archaeoglobus fulgidus DSM 4304 ) [TaxId: 224325 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | F420_ligase_1st | e2phnB1 | A: alpha arrays | X: HTH | H: CofE insertion domain (From Topology) | T: CofE insertion domain | F: F420_ligase_1st | ECOD (1.6) |
B | F420_ligase_2nd | e2phnB2 | A: a+b three layers | X: CofE-like (From Topology) | H: CofE-like (From Topology) | T: CofE-like | F: F420_ligase_2nd | ECOD (1.6) |
A | F420_ligase_1st | e2phnA1 | A: alpha arrays | X: HTH | H: CofE insertion domain (From Topology) | T: CofE insertion domain | F: F420_ligase_1st | ECOD (1.6) |
A | F420_ligase_2nd | e2phnA2 | A: a+b three layers | X: CofE-like (From Topology) | H: CofE-like (From Topology) | T: CofE-like | F: F420_ligase_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.30.1330.100 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
B | 3.90.1660.10 | Alpha Beta | Alpha-Beta Complex | CofE-like fold | CofE-like domain | CATH (4.3.0) |
A | 3.30.1330.100 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
A | 3.90.1660.10 | Alpha Beta | Alpha-Beta Complex | CofE-like fold | CofE-like domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01996 | F420-0:Gamma-glutamyl ligase (F420_ligase) | F420-0:Gamma-glutamyl ligase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002847 | Coenzyme F420:L-glutamate ligase-like domain | Domain | |
IPR023659 | Coenzyme F420:L-glutamate ligase, archaeal | Family | |
IPR008225 | Coenzyme F420:L-glutamate ligase | Family |