2V4E | pdb_00002v4e

A non-cytotoxic DsRed variant for whole-cell labeling

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2v4ea_ Alpha and beta proteins (a+b) GFP-like GFP-like Fluorescent proteins automated matches SEA ANEMONE 111 (Discosoma sp. ) [TaxId: 86600 ], SCOPe (2.08)
Bd2v4eb_ Alpha and beta proteins (a+b) GFP-like GFP-like Fluorescent proteins automated matches SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ], SCOPe (2.08)
Cd2v4ec_ Alpha and beta proteins (a+b) GFP-like GFP-like Fluorescent proteins automated matches SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ], SCOPe (2.08)
Dd2v4ed_ Alpha and beta proteins (a+b) GFP-like GFP-like Fluorescent proteins automated matches SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ], SCOPe (2.08)
Ed2v4ee_ Alpha and beta proteins (a+b) GFP-like GFP-like Fluorescent proteins automated matches SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ], SCOPe (2.08)
Fd2v4ef_ Alpha and beta proteins (a+b) GFP-like GFP-like Fluorescent proteins automated matches SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ], SCOPe (2.08)
Gd2v4eg_ Alpha and beta proteins (a+b) GFP-like GFP-like Fluorescent proteins automated matches SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ], SCOPe (2.08)
Hd2v4eh_ Alpha and beta proteins (a+b) GFP-like GFP-like Fluorescent proteins automated matches SEA ANEMONE (Discosoma sp. ) [TaxId: 86600 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGFPe2v4eA1 A: beta barrelsX: GFP-like (From Topology)H: GFP-like (From Topology)T: GFP-likeF: GFPECOD (1.6)
BGFPe2v4eB1 A: beta barrelsX: GFP-like (From Topology)H: GFP-like (From Topology)T: GFP-likeF: GFPECOD (1.6)
CGFPe2v4eC1 A: beta barrelsX: GFP-like (From Topology)H: GFP-like (From Topology)T: GFP-likeF: GFPECOD (1.6)
DGFPe2v4eD1 A: beta barrelsX: GFP-like (From Topology)H: GFP-like (From Topology)T: GFP-likeF: GFPECOD (1.6)
EGFPe2v4eE1 A: beta barrelsX: GFP-like (From Topology)H: GFP-like (From Topology)T: GFP-likeF: GFPECOD (1.6)
FGFPe2v4eF1 A: beta barrelsX: GFP-like (From Topology)H: GFP-like (From Topology)T: GFP-likeF: GFPECOD (1.6)
GGFPe2v4eG1 A: beta barrelsX: GFP-like (From Topology)H: GFP-like (From Topology)T: GFP-likeF: GFPECOD (1.6)
HGFPe2v4eH1 A: beta barrelsX: GFP-like (From Topology)H: GFP-like (From Topology)T: GFP-likeF: GFPECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.155.10 Mainly Beta Beta Barrel Green Fluorescent Protein Green fluorescent proteinCATH (4.3.0)
B2.40.155.10 Mainly Beta Beta Barrel Green Fluorescent Protein Green fluorescent proteinCATH (4.3.0)
C2.40.155.10 Mainly Beta Beta Barrel Green Fluorescent Protein Green fluorescent proteinCATH (4.3.0)
D2.40.155.10 Mainly Beta Beta Barrel Green Fluorescent Protein Green fluorescent proteinCATH (4.3.0)
E2.40.155.10 Mainly Beta Beta Barrel Green Fluorescent Protein Green fluorescent proteinCATH (4.3.0)
F2.40.155.10 Mainly Beta Beta Barrel Green Fluorescent Protein Green fluorescent proteinCATH (4.3.0)
G2.40.155.10 Mainly Beta Beta Barrel Green Fluorescent Protein Green fluorescent proteinCATH (4.3.0)
H2.40.155.10 Mainly Beta Beta Barrel Green Fluorescent Protein Green fluorescent proteinCATH (4.3.0)

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
NRQ Parent Component: MET, TYR, GLY

RESID:  AA0379

PSI-MOD :  2-imino-methionine 5-imidazolinone glycine MOD:00384
NRQ Parent Component: MET, TYR, GLY

RESID:  AA0379 , AA0379

PSI-MOD :  2-imino-methionine 5-imidazolinone glycine MOD:00384 , 2-imino-methionine 5-imidazolinone glycine MOD:00384
C, D, E, F, G
NRQ Parent Component: MET, TYR, GLY

RESID:  AA0379 , AA0379 , AA0379

PSI-MOD :  2-imino-methionine 5-imidazolinone glycine MOD:00384 , 2-imino-methionine 5-imidazolinone glycine MOD:00384 , 2-imino-methionine 5-imidazolinone glycine MOD:00384