2WV0
Crystal structure of the GntR-HutC family member YvoA from Bacillus subtilis
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Winged helix DNA-binding domain | 8085680 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GntR | e2wv0A2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
A | UTRA | e2wv0A1 | A: a+b two layers | X: Chorismate lyase (From Topology) | H: Chorismate lyase (From Topology) | T: Chorismate lyase | F: UTRA | ECOD (1.6) |
B | GntR | e2wv0B1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
B | UTRA | e2wv0B2 | A: a+b two layers | X: Chorismate lyase (From Topology) | H: Chorismate lyase (From Topology) | T: Chorismate lyase | F: UTRA | ECOD (1.6) |
C | GntR | e2wv0C1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
C | UTRA | e2wv0C2 | A: a+b two layers | X: Chorismate lyase (From Topology) | H: Chorismate lyase (From Topology) | T: Chorismate lyase | F: UTRA | ECOD (1.6) |
D | GntR | e2wv0D1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
D | UTRA | e2wv0D2 | A: a+b two layers | X: Chorismate lyase (From Topology) | H: Chorismate lyase (From Topology) | T: Chorismate lyase | F: UTRA | ECOD (1.6) |
E | GntR | e2wv0E1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
E | UTRA | e2wv0E2 | A: a+b two layers | X: Chorismate lyase (From Topology) | H: Chorismate lyase (From Topology) | T: Chorismate lyase | F: UTRA | ECOD (1.6) |
F | GntR | e2wv0F1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
F | UTRA | e2wv0F2 | A: a+b two layers | X: Chorismate lyase (From Topology) | H: Chorismate lyase (From Topology) | T: Chorismate lyase | F: UTRA | ECOD (1.6) |
G | GntR | e2wv0G1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
G | UTRA | e2wv0G2 | A: a+b two layers | X: Chorismate lyase (From Topology) | H: Chorismate lyase (From Topology) | T: Chorismate lyase | F: UTRA | ECOD (1.6) |
I | GntR | e2wv0I1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
I | UTRA | e2wv0I2 | A: a+b two layers | X: Chorismate lyase (From Topology) | H: Chorismate lyase (From Topology) | T: Chorismate lyase | F: UTRA | ECOD (1.6) |
J | GntR | e2wv0J1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
J | UTRA | e2wv0J2 | A: a+b two layers | X: Chorismate lyase (From Topology) | H: Chorismate lyase (From Topology) | T: Chorismate lyase | F: UTRA | ECOD (1.6) |
H | GntR | e2wv0H4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: GntR | ECOD (1.6) |
H | UTRA | e2wv0H3 | A: a+b two layers | X: Chorismate lyase (From Topology) | H: Chorismate lyase (From Topology) | T: Chorismate lyase | F: UTRA | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00392 | Bacterial regulatory proteins, gntR family (GntR) | Bacterial regulatory proteins, gntR family | This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerisation domain. The GntR-like proteins include the following sub-fam ... | Domain | |
PF07702 | UTRA domain (UTRA) | UTRA domain | The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain that has a similar fold to Pfam:PF04345 [1]. It is believed to modulate activity of bacterial transcription factors in response to binding small molecules ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050679 | Bacterial HTH-type transcriptional regulator | Family | |
IPR011663 | UbiC transcription regulator-associated | Domain | |
IPR028978 | Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR000524 | Transcription regulator HTH, GntR | Domain | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |