2YX6 | pdb_00002yx6

Crystal structure of PH0822

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2yx6a_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Nitrogenase accessory factor-like	automated matches	automated matches	(Pyrococcus horikoshii OT3 ) [TaxId: 70601 ],	SCOPe (2.08)
B	d2yx6b_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Nitrogenase accessory factor-like	automated matches	automated matches	(Pyrococcus horikoshii OT3 ) [TaxId: 70601 ],	SCOPe (2.08)
C	d2yx6c_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Nitrogenase accessory factor-like	automated matches	automated matches	(Pyrococcus horikoshii OT3 ) [TaxId: 70601 ],	SCOPe (2.08)
D	d2yx6d_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Nitrogenase accessory factor-like	automated matches	automated matches	(Pyrococcus horikoshii OT3 ) [TaxId: 70601 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	MTH1175-like	8063577	4000559	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nitrogenase accessory factor-like	8063578	3000583	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Nitrogenase accessory factor-like	8063578	3000583	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nitrogenase accessory factor-like	8063578	3000583	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nitrogenase accessory factor-like	8063578	3000583	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Nitro_FeMo-Co	e2yx6A1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Nitrogenase accessory factor-like (From Topology)	T: Nitrogenase accessory factor-like	F: Nitro_FeMo-Co	ECOD (1.6)
B	Nitro_FeMo-Co	e2yx6B1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Nitrogenase accessory factor-like (From Topology)	T: Nitrogenase accessory factor-like	F: Nitro_FeMo-Co	ECOD (1.6)
C	Nitro_FeMo-Co	e2yx6C1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Nitrogenase accessory factor-like (From Topology)	T: Nitrogenase accessory factor-like	F: Nitro_FeMo-Co	ECOD (1.6)
D	Nitro_FeMo-Co	e2yx6D1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Nitrogenase accessory factor-like (From Topology)	T: Nitrogenase accessory factor-like	F: Nitro_FeMo-Co	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.420.130	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
B	3.30.420.130	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
C	3.30.420.130	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
D	3.30.420.130	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02579	Dinitrogenase iron-molybdenum cofactor (Nitro_FeMo-Co)	Dinitrogenase iron-molybdenum cofactor	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Hypothetical protein PH0822	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR033913	MTH1175 domain	Domain
A, B, C, D	IPR003731	Dinitrogenase iron-molybdenum cofactor biosynthesis	Domain
A, B, C, D	IPR036105	Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily	Homologous Superfamily
A, B, C, D	IPR051840	NifX/NifY domain-containing protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.