Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRetrovirus capsid dimerization domain-like 8077054 3001819 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRetrovirus capsid dimerization domain-like 8077054 3001819 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRetrovirus capsid dimerization domain-like 8077054 3001819 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRetrovirus capsid dimerization domain-like 8077054 3001819 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRetrovirus capsid dimerization domain-like 8077054 3001819 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRetrovirus capsid dimerization domain-like 8077054 3001819 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGag_p24_Ce3gv2A1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein-C (From Topology)T: Retrovirus capsid protein-CF: Gag_p24_CECOD (1.6)
AGag_p24_Ne3gv2A2 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
BGag_p24_Ce3gv2B1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein-C (From Topology)T: Retrovirus capsid protein-CF: Gag_p24_CECOD (1.6)
BGag_p24_Ne3gv2B2 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
CGag_p24_Ce3gv2C1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein-C (From Topology)T: Retrovirus capsid protein-CF: Gag_p24_CECOD (1.6)
CGag_p24_Ne3gv2C2 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
DGag_p24_Ce3gv2D1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein-C (From Topology)T: Retrovirus capsid protein-CF: Gag_p24_CECOD (1.6)
DGag_p24_Ne3gv2D2 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
EGag_p24_Ce3gv2E1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein-C (From Topology)T: Retrovirus capsid protein-CF: Gag_p24_CECOD (1.6)
EGag_p24_Ne3gv2E2 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)
FGag_p24_Ce3gv2F1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein-C (From Topology)T: Retrovirus capsid protein-CF: Gag_p24_CECOD (1.6)
FGag_p24_Ne3gv2F2 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: Gag_p24_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00607gag protein p24 N-terminal domain (Gag_p24)gag protein p24 N-terminal domainp24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.Domain
A, B, C, D, E
PF19317Gag protein p24 C-terminal domain (Gag_p24_C)Gag protein p24 C-terminal domainp24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Capsid protein p24,Carbon dioxide-concentrating mechanism protein CcmK homolog 4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR000071Immunodeficiency lentiviral matrix, N-terminalDomain
A, B, C, D, E
IPR045345Retroviral nucleocapsid Gag protein p24, C-terminal domainDomain
A, B, C, D, E
IPR036875Zinc finger, CCHC-type superfamilyHomologous Superfamily
A, B, C, D, E
IPR050195Primate lentivirus group Gag polyprotein-likeDomain
A, B, C, D, E
IPR001878Zinc finger, CCHC-typeDomain
A, B, C, D, E
IPR008919Retrovirus capsid, N-terminalHomologous Superfamily
A, B, C, D, E
IPR010999Retroviral matrix proteinHomologous Superfamily
A, B, C, D, E
IPR012344Matrix protein, lentiviral and alpha-retroviral, N-terminalHomologous Superfamily
A, B, C, D, E
IPR014817Gag protein p6Domain
A, B, C, D, E
IPR008916Retrovirus capsid, C-terminalHomologous Superfamily
A, B, C, D, E
IPR020808Bacterial microcompartments protein, conserved siteConserved Site
A, B, C, D, E
IPR046380Carboxysome shell protein CcmKFamily
A, B, C, D, E
IPR000249Bacterial microcompartment domainDomain
A, B, C, D, E
IPR050575Bacterial microcompartment shellFamily
A, B, C, D, E
IPR044872CcmK/CsoS1, bacterial microcompartment domainDomain
A, B, C, D, E
IPR037233CcmK-like superfamilyHomologous Superfamily