3OFI
Crystal structure of human insulin-degrading enzyme in complex with ubiquitin
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d3ofic_ | Peptides | Ubiquitin fragments | Ubiquitin fragments | Ubiquitin fragments | Ubiquitin fragments | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d3ofid_ | Peptides | Ubiquitin fragments | Ubiquitin fragments | Ubiquitin fragments | Ubiquitin fragments | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_M16_M_C | e3ofiA11 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_M_C | ECOD (1.6) |
A | Peptidase_M16_M_N | e3ofiA12 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_M_N | ECOD (1.6) |
A | Peptidase_M16_C_2 | e3ofiA13 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_C_2 | ECOD (1.6) |
A | Peptidase_M16 | e3ofiA1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16 | ECOD (1.6) |
B | Peptidase_M16_M_C | e3ofiB11 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_M_C | ECOD (1.6) |
B | Peptidase_M16_M_N | e3ofiB12 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_M_N | ECOD (1.6) |
B | Peptidase_M16_C_2 | e3ofiB13 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_C_2 | ECOD (1.6) |
B | Peptidase_M16 | e3ofiB1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
B | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain | |
PF16187 | Middle or third domain of peptidase_M16 (Peptidase_M16_M) | Middle or third domain of peptidase_M16 | - | Family | |
PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011249 | Metalloenzyme, LuxS/M16 peptidase-like | Homologous Superfamily | |
IPR050626 | Peptidase M16 | Family | |
IPR032632 | Peptidase M16, middle/third domain | Domain | |
IPR001431 | Peptidase M16, zinc-binding site | Binding Site | |
IPR007863 | Peptidase M16, C-terminal | Domain | |
IPR011765 | Peptidase M16, N-terminal | Domain | |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR019956 | Ubiquitin domain | Domain | |
IPR050158 | Ubiquitin and ubiquitin-like | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |