4BQA | pdb_00004bqa

Crystal structure of the ETS domain of human ETS2 in complex with DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ets	e4bqaA1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Ets	ECOD (1.6)
G	Ets	e4bqaG1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Ets	ECOD (1.6)
D	Ets	e4bqaD1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Ets	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
G	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
D	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D, G	PF00178	Ets-domain (Ets)	Ets-domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D, G	PROTEIN C-ETS-2	transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding nuclear glucocorticoid receptor binding DNA-binding transcription factor binding protein domain specific binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription repressor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity DNA binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding nuclear glucocorticoid receptor binding DNA-binding transcription factor binding protein domain specific binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription repressor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding	developmental process anatomical structure development tissue development mesoderm development multicellular organism development multicellular organismal process skeletal system development system development regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process developmental process anatomical structure development tissue development mesoderm development multicellular organism development multicellular organismal process skeletal system development system development regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process negative regulation of biological process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process formation of primary germ layer ectodermal cell fate commitment cellular developmental process embryonic morphogenesis embryo development gastrulation ectoderm formation cell fate commitment involved in formation of primary germ layer anatomical structure morphogenesis ectoderm development cell differentiation anatomical structure formation involved in morphogenesis ectodermal cell differentiation cell fate commitment positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process primitive streak formation anterior/posterior pattern specification pattern specification process regionalization anterior/posterior axis specification gastrulation with mouth forming second axis specification	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome
B, E, H	5'-D(APCPCPGPGPAPAPGPTPGP)-3'	-	-	-
C, F, I	5'-D(CPAPCPTPTPCPCPGPGPTP)-3'	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D, G	IPR045688	Ets1, N-terminal flanking region of Ets domain	Domain
A, D, G	IPR027276	Transforming protein C-ets-2	Family
A, D, G	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A, D, G	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, D, G	IPR000418	Ets domain	Domain
A, D, G	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, D, G	IPR016311	Transforming protein C-ets	Family
A, D, G	IPR046328	ETS family	Family
A, D, G	IPR003118	Pointed domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, D, G	Pharos: P15036	Nerve Degeneration allergic contact dermatitis breast cancer breast carcinoma lung cancer acute myeloid leukemia osteosarcoma pituitary cancer Barrett esophagus transitional cell carcinoma cancer Down syndrome glioblastoma large cell medulloblastoma malignant colon neoplasm Nerve Degeneration allergic contact dermatitis breast cancer breast carcinoma lung cancer acute myeloid leukemia osteosarcoma pituitary cancer Barrett esophagus transitional cell carcinoma cancer Down syndrome glioblastoma large cell medulloblastoma malignant colon neoplasm malignant pancreatic neoplasm medulloblastoma non-small cell lung carcinoma adenoma ovarian cancer astrocytic tumor primitive neuroectodermal tumor tuberculosis Emery-Dreifuss muscular dystrophy invasive ductal breast carcinoma lung adenocarcinoma malignant glioma myopathy oligodendroglioma adrenal cortex carcinoma pancreatic ductal adenocarcinoma atypical teratoid rhabdoid tumor psoriasis ulcerative colitis dermatomyositis gastric carcinoma juvenile dermatomyositis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.