Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AProtoglobine4zvbA1 A: alpha arraysX: Globin-like (From Topology)H: Globin-like (From Topology)T: Globin-likeF: ProtoglobinECOD (1.6)
BProtoglobine4zvbB1 A: alpha arraysX: Globin-like (From Topology)H: Globin-like (From Topology)T: Globin-likeF: ProtoglobinECOD (1.6)
CProtoglobine4zvbC1 A: alpha arraysX: Globin-like (From Topology)H: Globin-like (From Topology)T: Globin-likeF: ProtoglobinECOD (1.6)
DProtoglobine4zvbD1 A: alpha arraysX: Globin-like (From Topology)H: Globin-like (From Topology)T: Globin-likeF: ProtoglobinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.490.10 Mainly Alpha Orthogonal Bundle Globin-like GlobinsCATH (4.3.0)
B1.10.490.10 Mainly Alpha Orthogonal Bundle Globin-like GlobinsCATH (4.3.0)
C1.10.490.10 Mainly Alpha Orthogonal Bundle Globin-like GlobinsCATH (4.3.0)
D1.10.490.10 Mainly Alpha Orthogonal Bundle Globin-like GlobinsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF11563Protoglobin (Protoglobin)ProtoglobinThis family includes protoglobin from Methanosarcina acetivorans C2A. It is also found near the N-terminus of the Haem-based aerotactic transducer HemAT in Bacillus subtilis (Swiss:O07621). It is part of the haemoglobin superfamily. Protoglobin has s ...This family includes protoglobin from Methanosarcina acetivorans C2A. It is also found near the N-terminus of the Haem-based aerotactic transducer HemAT in Bacillus subtilis (Swiss:O07621). It is part of the haemoglobin superfamily. Protoglobin has specific loops and an amino-terminal extension which leads to the burying of the haem within the matrix of the protein. Protoglobin-specific apolar tunnels allow the access of O2, CO and NO to the haem distal site [1]. In HemAT it acts as an oxygen sensor domain [2]. It can also recognise cyanide (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Diguanylate cyclase DosC