5J3E | pdb_00005j3e

Crystal Structure of Human THYN1 protein in complex with 5-methylcytosine containing DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PUA domain-like	8060289	3001015	SCOP2B (2022-06-29)
B	SCOP2 Family	EVE domain-like	8060288	4002214	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	PUA domain-like	8060289	3001015	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EVE	e5j3eA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: EVE	ECOD (1.6)
B	EVE	e5j3eB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: PUA domain	F: EVE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.590.10	Alpha Beta	Roll	ph1033 like fold	ph1033 like domains	CATH (4.3.0)
B	3.10.590.10	Alpha Beta	Roll	ph1033 like fold	ph1033 like domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01878	EVE domain (EVE)	EVE domain	This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Thymocyte nuclear protein 1	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
C, D, E, F	5-methylcytosine containing DNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR015947	PUA-like superfamily	Homologous Superfamily
A, B	IPR052181	5-Hydroxymethylcytosine binding	Family
A, B	IPR002740	EVE domain	Domain
A, B	IPR047197	Thymocyte nuclear protein 1-like, EVE domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9P016	Liver Cirrhosis, Experimental prostate cancer cystic fibrosis lymphoplasmacytic lymphoma plasma cell myeloma tuberculosis osteosarcoma lung cancer ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.