5YRV
Diol dehydratase, AdoCbl/1,2-propanediol, anaerobically-prepared crystal
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cobalamin (vitamin B12)-dependent enzymes | 8043858 | 3000609 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cobalamin (vitamin B12)-dependent enzymes | 8043858 | 3000609 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Cobalamin (vitamin B12)-dependent enzymes | 8043858 | 3000609 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Cobalamin (vitamin B12)-dependent enzymes | 8043858 | 3000609 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | B12-dependent dehydatase associated subunit | 8044419 | 3000491 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | B12-dependent dehydatase associated subunit | 8044419 | 3000491 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | B12-dependent dehydatase associated subunit | 8044419 | 3000491 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | B12-dependent dehydatase associated subunit | 8044419 | 3000491 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Diol dehydratase, gamma subunit | 8036835 | 3001460 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Diol dehydratase, gamma subunit | 8036835 | 3001460 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Diol dehydratase, gamma subunit | 8036835 | 3001460 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Diol dehydratase, gamma subunit | 8036835 | 3001460 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Dehydratase_LU | e5yrvA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Dehydratase_LU | ECOD (1.6) |
D | Dehydratase_LU | e5yrvD1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Dehydratase_LU | ECOD (1.6) |
G | Dehydratase_LU | e5yrvG1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Dehydratase_LU | ECOD (1.6) |
J | Dehydratase_LU | e5yrvJ1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Dehydratase_LU | ECOD (1.6) |
H | Dehydratase_MU | e5yrvH1 | A: a/b three-layered sandwiches | X: B12-dependent dehydratase associated subunit (From Topology) | H: B12-dependent dehydratase associated subunit (From Topology) | T: B12-dependent dehydratase associated subunit | F: Dehydratase_MU | ECOD (1.6) |
B | Dehydratase_MU | e5yrvB1 | A: a/b three-layered sandwiches | X: B12-dependent dehydratase associated subunit (From Topology) | H: B12-dependent dehydratase associated subunit (From Topology) | T: B12-dependent dehydratase associated subunit | F: Dehydratase_MU | ECOD (1.6) |
E | Dehydratase_MU | e5yrvE1 | A: a/b three-layered sandwiches | X: B12-dependent dehydratase associated subunit (From Topology) | H: B12-dependent dehydratase associated subunit (From Topology) | T: B12-dependent dehydratase associated subunit | F: Dehydratase_MU | ECOD (1.6) |
K | Dehydratase_MU | e5yrvK1 | A: a/b three-layered sandwiches | X: B12-dependent dehydratase associated subunit (From Topology) | H: B12-dependent dehydratase associated subunit (From Topology) | T: B12-dependent dehydratase associated subunit | F: Dehydratase_MU | ECOD (1.6) |
C | Dehydratase_SU | e5yrvC1 | A: alpha bundles | X: Diol dehydratase, gamma subunit (From Topology) | H: Diol dehydratase, gamma subunit (From Topology) | T: Diol dehydratase, gamma subunit | F: Dehydratase_SU | ECOD (1.6) |
F | Dehydratase_SU | e5yrvF1 | A: alpha bundles | X: Diol dehydratase, gamma subunit (From Topology) | H: Diol dehydratase, gamma subunit (From Topology) | T: Diol dehydratase, gamma subunit | F: Dehydratase_SU | ECOD (1.6) |
I | Dehydratase_SU | e5yrvI1 | A: alpha bundles | X: Diol dehydratase, gamma subunit (From Topology) | H: Diol dehydratase, gamma subunit (From Topology) | T: Diol dehydratase, gamma subunit | F: Dehydratase_SU | ECOD (1.6) |
L | Dehydratase_SU | e5yrvL1 | A: alpha bundles | X: Diol dehydratase, gamma subunit (From Topology) | H: Diol dehydratase, gamma subunit (From Topology) | T: Diol dehydratase, gamma subunit | F: Dehydratase_SU | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02286 | Dehydratase large subunit (Dehydratase_LU) | Dehydratase large subunit | This family contains the large subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances. | Domain | |
PF02288 | Dehydratase medium subunit (Dehydratase_MU) | Dehydratase medium subunit | This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances. | Domain | |
PF02287 | Dehydratase small subunit (Dehydratase_SU) | Dehydratase small subunit | This family contains the small subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Diol dehydrase alpha subunit | - | - | ||
Diol dehydrase beta subunit | - | - | ||
Diol dehydrase gamma subunit | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003206 | Diol/glycerol dehydratase, large subunit | Domain | |
IPR036999 | Diol/glycerol dehydratase, large subunit superfamily | Homologous Superfamily | |
IPR016176 | Cobalamin (vitamin B12)-dependent enzyme, catalytic | Homologous Superfamily | |
IPR025541 | Propanediol/glycerol dehydratase, medium subunit | Family | |
IPR003208 | Diol/glycerol dehydratase/dehydratase reactivating factor | Family | |
IPR010254 | B12-dependent dehydratases, beta subunit | Homologous Superfamily | |
IPR036091 | Propanediol/glycerol dehydratase, small subunit superfamily | Homologous Superfamily | |
IPR003207 | Propanediol/glycerol dehydratase, small subunit | Family |