Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5zzna_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Photosystem Q(B) protein 1, PsbA1 (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Bd5zznb_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Cd5zznc_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Dd5zznd_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
X [auth e]d5zzne_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits Cytochrome b559 subunit alpha, PsbE (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Y [auth f]d5zznf_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Z [auth h]d5zznh_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II 10 kDa phosphoprotein PsbH PsbH-like Photosystem II reaction center protein H, PsbH (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
BA [auth j]d5zznj_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein J, PsbJ PsbJ-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
J [auth K]d5zznk_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein K, PsbK PsbK-like Photosystem II reaction center protein K, PsbK (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
EA [auth m]d5zznm_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein M, PsbM PsbM-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
M [auth O]d5zzno_ Membrane and cell surface proteins and peptides Transmembrane beta-barrels OMPA-like PsbO-like Manganese-stabilising protein, PsbO (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
N [auth T]d5zznt_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein T, PsbT PsbT-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
HA [auth u]d5zznu_ All alpha proteins SAM domain-like PsbU/PolX domain-like PsbU-like Photosystem II 12 kDa extrinsic protein PsbU (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
IA [auth v]d5zznv_ All alpha proteins Cytochrome c Cytochrome c monodomain cytochrome c Cytochrome c550 (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
KA [auth x]d5zznx_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein X, PsbX PsbX-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
S [auth Z]d5zznz_ Membrane and cell surface proteins and peptides Transmembrane helix hairpin PsbZ-like PsbZ-like Photosystem II reaction center protein Z, PsbZ (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032741 3000736 SCOP2B (2022-06-29)
T [auth a]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032741 3000736 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like 8032743 3001674 SCOP2B (2022-06-29)
U [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8032743 3001674 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPhotosystem II antenna protein-like 8032746 3001674 SCOP2B (2022-06-29)
V [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8032746 3001674 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032750 3000736 SCOP2B (2022-06-29)
W [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032750 3000736 SCOP2B (2022-06-29)
X [auth e]SCOP2B SuperfamilyCytochrome b559 subunits 8032749 3001602 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome b559 subunits 8032749 3001602 SCOP2B (2022-06-29)
Y [auth f]SCOP2B SuperfamilyCytochrome b559 subunits 8032752 3001602 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCytochrome b559 subunits 8032752 3001602 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8032753 3001547 SCOP2B (2022-06-29)
Z [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8032753 3001547 SCOP2B (2022-06-29)
AA [auth i]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8032754 3001590 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8032754 3001590 SCOP2B (2022-06-29)
BA [auth j]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8032755 3001534 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8032755 3001534 SCOP2B (2022-06-29)
CA [auth k]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8032757 3001585 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8032757 3001585 SCOP2B (2022-06-29)
DA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8032759 3001523 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8032759 3001523 SCOP2B (2022-06-29)
EA [auth m]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8032762 3001573 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8032762 3001573 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyOMPA barrel-like 8032765 3000208 SCOP2B (2022-06-29)
FA [auth o]SCOP2B SuperfamilyOMPA barrel-like 8032765 3000208 SCOP2B (2022-06-29)
GA [auth t]SCOP2B SuperfamilyPhotosystem II reaction center protein T, PsbT 8032769 3001561 SCOP2B (2022-06-29)
N [auth T]SCOP2B SuperfamilyPhotosystem II reaction center protein T, PsbT 8032769 3001561 SCOP2B (2022-06-29)
HA [auth u]SCOP2B SuperfamilyPsbU/PolX domain-like 8032768 3000893 SCOP2B (2022-06-29)
O [auth U]SCOP2B SuperfamilyPsbU/PolX domain-like 8032768 3000893 SCOP2B (2022-06-29)
IA [auth v]SCOP2B SuperfamilyCytochrome c 8036565 3000815 SCOP2B (2022-06-29)
P [auth V]SCOP2B SuperfamilyCytochrome c 8036565 3000815 SCOP2B (2022-06-29)
JA [auth y]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf12 8093136 3002680 SCOP2B (2022-06-29)
Q [auth Y]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf12 8093136 3002680 SCOP2B (2022-06-29)
LA [auth z]SCOP2B SuperfamilyPsbZ-like 8032770 3001624 SCOP2B (2022-06-29)
S [auth Z]SCOP2B SuperfamilyPsbZ-like 8032770 3001624 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhoto_RCe5zznA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
T [auth a]Photo_RCe5zzna1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
BPSII_1ste5zznB2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
BPSII_2nde5zznB1 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
U [auth b]PSII_1ste5zznb2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
U [auth b]PSII_2nde5zznb1 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
CPSII_1ste5zznC1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
V [auth c]PSII_1ste5zznc1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
DPhoto_RCe5zznD1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
W [auth d]Photo_RCe5zznd1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
X [auth e]Cytochrom_B559ae5zzne1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
ECytochrom_B559ae5zznE1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
Y [auth f]Cytochrom_B559e5zznf1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
FCytochrom_B559e5zznF1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
G [auth H]PsbHe5zznH1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
Z [auth h]PsbHe5zznh1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
AA [auth i]PsbIe5zzni1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
H [auth I]PsbIe5zznI1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
BA [auth j]PsbJe5zznj1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)
I [auth J]PsbJe5zznJ1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)
CA [auth k]PsbKe5zznk1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
J [auth K]PsbKe5zznK1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
DA [auth l]PsbLe5zznl1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
K [auth L]PsbLe5zznL1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
EA [auth m]PsbMe5zznm1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
L [auth M]PsbMe5zznM1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
M [auth O]MSPe5zznO1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
FA [auth o]MSPe5zzno1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
GA [auth t]PsbTe5zznt1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
N [auth T]PsbTe5zznT1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
HA [auth u]PsbUe5zznu1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PsbUECOD (1.6)
O [auth U]PsbUe5zznU1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PsbUECOD (1.6)
IA [auth v]Cytochrom_C550e5zznv1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C550ECOD (1.6)
P [auth V]Cytochrom_C550e5zznV1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C550ECOD (1.6)
JA [auth y]PSII_Ycf12e5zzny1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
Q [auth Y]PSII_Ycf12e5zznY1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
R [auth X]PsbXe5zznX1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
KA [auth x]PsbXe5zznx1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
LA [auth z]Ycf9e5zznz1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)
S [auth Z]Ycf9e5zznZ1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (4.3.0)
U [auth b]3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (4.3.0)
C1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (4.3.0)
V [auth c]1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (4.3.0)
X [auth e]1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (4.3.0)
E1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (4.3.0)
G [auth H]1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (4.3.0)
Z [auth h]1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (4.3.0)
BA [auth j]6.10.250.2070 Special Helix non-globular Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
HA [auth u]1.10.150.320 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)
O [auth U]1.10.150.320 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)
IA [auth v]1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
P [auth V]1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
LA [auth z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (4.3.0)
S [auth Z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
T [auth a]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
B,
U [auth b]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
C,
V [auth c]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
D,
W [auth d]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
E,
X [auth e]
PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
E,
X [auth e]
PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
F,
Y [auth f]
PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
G [auth H],
Z [auth h]
PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
AA [auth i],
H [auth I]
PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
BA [auth j],
I [auth J]
PF01788PsbJ (PsbJ)PsbJ- Family
CA [auth k],
J [auth K]
PF02533Photosystem II 4 kDa reaction centre component (PsbK)Photosystem II 4 kDa reaction centre component- Family
DA [auth l],
K [auth L]
PF02419PsbL protein (PsbL)PsbL protein- Family
EA [auth m],
L [auth M]
PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
FA [auth o],
M [auth O]
PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
GA [auth t],
N [auth T]
PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
HA [auth u],
O [auth U]
PF06514Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU)Photosystem II 12 kDa extrinsic protein (PsbU)- Family
IA [auth v],
P [auth V]
PF14495Cytochrome c-550 domain (Cytochrom_C550)Cytochrome c-550 domainThis domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1].Domain
JA [auth y],
Q [auth Y]
PF05969Photosystem II complex subunit Ycf12 (PSII_Ycf12)Photosystem II complex subunit Ycf12- Family
KA [auth x],
R [auth X]
PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
LA [auth z],
S [auth Z]
PF01737YCF9 (Ycf9)YCF9- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
T [auth a]
Photosystem II protein D1 1
B,
U [auth b]
Photosystem II CP47 reaction center protein
C,
V [auth c]
Photosystem II CP43 reaction center protein
D,
W [auth d]
Photosystem II D2 protein
E,
X [auth e]
Cytochrome b559 subunit alpha
F,
Y [auth f]
Cytochrome b559 subunit beta
G [auth H],
Z [auth h]
Photosystem II reaction center protein H
AA [auth i],
H [auth I]
Photosystem II reaction center protein I-
BA [auth j],
I [auth J]
Photosystem II reaction center protein J-
CA [auth k],
J [auth K]
Photosystem II reaction center protein K-
DA [auth l],
K [auth L]
Photosystem II reaction center protein L-
EA [auth m],
L [auth M]
Photosystem II reaction center protein M-
FA [auth o],
M [auth O]
Photosystem II manganese-stabilizing polypeptide
GA [auth t],
N [auth T]
Photosystem II reaction center protein T-
HA [auth u],
O [auth U]
Photosystem II 12 kDa extrinsic protein-
IA [auth v],
P [auth V]
Cytochrome c-550
JA [auth y],
Q [auth Y]
Photosystem II reaction center protein Ycf12-
KA [auth x],
R [auth X]
Photosystem II reaction center X protein-
LA [auth z],
S [auth Z]
Photosystem II reaction center protein Z-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
T [auth a]
IPR005867Photosystem II protein D1Family
A,
T [auth a]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
T [auth a]
IPR000484Photosynthetic reaction centre, L/MFamily
B,
U [auth b]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
U [auth b]
IPR000932Photosystem antenna protein-likeFamily
B,
U [auth b]
IPR017486Photosystem II CP47 reaction centre proteinFamily
C,
V [auth c]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
V [auth c]
IPR000932Photosystem antenna protein-likeFamily
C,
V [auth c]
IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
V [auth c]
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
D,
W [auth d]
IPR005868Photosystem II D2Family
D,
W [auth d]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D,
W [auth d]
IPR000484Photosynthetic reaction centre, L/MFamily
E,
X [auth e]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
E,
X [auth e]
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
E,
X [auth e]
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
E,
X [auth e]
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
E,
X [auth e]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
F,
Y [auth f]
IPR006241Photosystem II cytochrome b559, beta subunitFamily
F,
Y [auth f]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
F,
Y [auth f]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
G [auth H],
Z [auth h]
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
G [auth H],
Z [auth h]
IPR001056Photosystem II reaction centre protein HFamily
AA [auth i],
H [auth I]
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
AA [auth i],
H [auth I]
IPR003686Photosystem II PsbIFamily
BA [auth j],
I [auth J]
IPR002682Photosystem II PsbJFamily
BA [auth j],
I [auth J]
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
CA [auth k],
J [auth K]
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
CA [auth k],
J [auth K]
IPR003687Photosystem II PsbKFamily
DA [auth l],
K [auth L]
IPR003372Photosystem II PsbLFamily
DA [auth l],
K [auth L]
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
EA [auth m],
L [auth M]
IPR007826Photosystem II PsbMFamily
EA [auth m],
L [auth M]
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
FA [auth o],
M [auth O]
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
FA [auth o],
M [auth O]
IPR002628Photosystem II extrinsic protein OFamily
GA [auth t],
N [auth T]
IPR001743Photosystem II PsbTFamily
GA [auth t],
N [auth T]
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
HA [auth u],
O [auth U]
IPR010527Photosystem II PsbU, oxygen evolving complexFamily
IA [auth v],
P [auth V]
IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
IA [auth v],
P [auth V]
IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
IA [auth v],
P [auth V]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
IA [auth v],
P [auth V]
IPR009056Cytochrome c-like domainDomain
IA [auth v],
P [auth V]
IPR029490Cytochrome c-550 domainDomain
JA [auth y],
Q [auth Y]
IPR010284Photosystem II reaction center protein Ycf12Family
KA [auth x],
R [auth X]
IPR009518Photosystem II PsbXFamily
KA [auth x],
R [auth X]
IPR023431Photosystem II PsbX, type 1 subfamilyFamily
LA [auth z],
S [auth Z]
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
LA [auth z],
S [auth Z]
IPR002644Photosystem II PsbZ, reaction centreFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
D,
W [auth d]
HSK Parent Component: HIS

AA [auth i],
H [auth I]
FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
EA [auth m],
L [auth M]
FME Parent Component: MET

RESIDAA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
GA [auth t],
N [auth T]
FME Parent Component: MET

RESIDAA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891