6EED
X-ray crystal structure of Pf-M1 in complex with inhibitor (6p) and catalytic zinc ion
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DUF3458 | e6eedA4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF3458 | ECOD (1.6) |
A | Peptidase_M1_2 | e6eedA1 | A: beta sandwiches | X: Baculovirus p35 protein-related (From Topology) | H: Baculovirus p35 protein-related (From Topology) | T: Baculovirus p35 protein-related | F: Peptidase_M1_2 | ECOD (1.6) |
A | DUF3458_C | e6eedA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: DUF3458_C | ECOD (1.6) |
A | Peptidase_M1_1 | e6eedA2 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M1_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.1730 | Mainly Beta | Sandwich | Immunoglobulin-like | tricorn interacting facor f3 domain | CATH (4.3.0) |
A | 3.30.2010.30 | Alpha Beta | 2-Layer Sandwich | Zincin-like | CATH (4.3.0) | |
A | 1.10.390.10 | Mainly Alpha | Orthogonal Bundle | Neutral Protease | domain 2 | CATH (4.3.0) |
A | 2.60.40.1840 | Mainly Beta | Sandwich | Immunoglobulin-like | Aminopeptidase N, middle-beta domain | CATH (4.3.0) |
A | 1.25.50.10 | Mainly Alpha | Alpha Horseshoe | Zincin-like fold | Peptidase M1, alanyl aminopeptidase, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11940 | Domain of unknown function (DUF3458) Ig-like fold (DUF3458) | Domain of unknown function (DUF3458) Ig-like fold | This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. The domain has an Ig-like fold. This domain is found associated with Pfam:PF01433. | Domain | |
PF17432 | Domain of unknown function (DUF3458_C) ARM repeats (DUF3458_C) | Domain of unknown function (DUF3458_C) ARM repeats | - | Repeat | |
PF01433 | Peptidase family M1 domain (Peptidase_M1) | Peptidase family M1 domain | Members of this family are aminopeptidases. The members differ widely in specificity, hydrolysing acidic, basic or neutral N-terminal residues. This family includes leukotriene-A4 hydrolase Swiss:P09960, this enzyme also has an aminopeptidase activ ... | Domain | |
PF17900 | Peptidase M1 N-terminal domain (Peptidase_M1_N) | Peptidase M1 N-terminal domain | This domain is found at the N-terminus of aminopeptidases from the M1 family. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001930 | Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase | Family | |
IPR024601 | Peptidase M1, alanyl aminopeptidase, C-terminal | Domain | |
IPR012779 | Peptidase M1, alanyl aminopeptidase | Family | |
IPR037144 | Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily | Homologous Superfamily | |
IPR035414 | Peptidase M1, alanyl aminopeptidase, Ig-like fold | Domain | |
IPR027268 | Peptidase M4/M1, CTD superfamily | Homologous Superfamily | |
IPR014782 | Peptidase M1, membrane alanine aminopeptidase | Domain | |
IPR045357 | Aminopeptidase N-like , N-terminal domain | Domain | |
IPR042097 | Aminopeptidase N-like , N-terminal domain superfamliy | Homologous Superfamily | |
IPR038438 | Alanyl aminopeptidase, Ig-like domain superfamily | Homologous Superfamily |