6ZO0

2.23 A resolution 3,4-dimethylcatechol (3,4-dimethylbenzene-1,2-diol) inhibited Sporosarcina pasteurii urease


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth AAA]SCOP2B SuperfamilyUrease, gamma-subunit 8078157 3001945 SCOP2B (2022-06-29)
B [auth BBB]SCOP2B SuperfamilyUrease, beta-subunit 8043131 3001949 SCOP2B (2022-06-29)
C [auth CCC]SCOP2B SuperfamilyMetallo-dependent hydrolases 8043430 3000428 SCOP2B (2022-06-29)
C [auth CCC]SCOP2B SuperfamilyComposite domain of metallo-dependent hydrolases 8043172 3000176 SCOP2B (2022-06-29)
C [auth CCC]SCOP2B SuperfamilyMetallo-dependent hydrolases 8043430 3000428 SCOP2B (2022-06-29)
C [auth CCC]SCOP2B SuperfamilyComposite domain of metallo-dependent hydrolases 8043172 3000176 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth AAA]Urease_gammae6zo0AAA1 A: a+b two layersX: Urease, gamma-subunit (From Topology)H: Urease, gamma-subunit (From Topology)T: Urease, gamma-subunitF: Urease_gammaECOD (1.6)
B [auth BBB]Urease_betae6zo0BBB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Urease, beta-subunit (From Topology)T: Urease, beta-subunitF: Urease_betaECOD (1.6)
C [auth CCC]Urease_alphae6zo0CCC1 A: beta sandwichesX: Composite domain of metallo-dependent hydrolases (From Topology)H: Composite domain of metallo-dependent hydrolases (From Topology)T: Composite domain of metallo-dependent hydrolasesF: Urease_alphaECOD (1.6)
C [auth CCC]Amidohydro_1_Ne6zo0CCC2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Amidohydro_1_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth AAA]PF00547Urease, gamma subunit (Urease_gamma)Urease, gamma subunitUrease is a nickel-binding enzyme that catalyses the hydrolysis of urea to carbon dioxide and ammonia.Domain
B [auth BBB]PF00699Urease beta subunit (Urease_beta)Urease beta subunitThis subunit is known as alpha in Heliobacter.Domain
C [auth CCC]PF00449Urease alpha-subunit, N-terminal domain (Urease_alpha)Urease alpha-subunit, N-terminal domainThe N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit.Domain
C [auth CCC]PF01979Amidohydrolase family (Amidohydro_1)Amidohydrolase familyThis family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisatio ...This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source [2]. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit [3]. Dihydroorotases (EC:3.5.2.3) are also included [4-5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AAA]Urease subunit gamma
B [auth BBB]Urease subunit beta
C [auth CCC]Urease subunit alpha

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth AAA]CXM Parent Component: MET

RESIDAA0363 , AA0493

PSI-MOD :  N-carboxy-L-methionine MOD:00368 , N-(dihydroxymethyl)-L-methionine (fMet) MOD:01446 , N-(dihydroxymethyl)-L-methionine (Met) MOD:01447
C [auth CCC]KCX Parent Component: LYS

RESIDAA0363 , AA0493

C [auth CCC]QO8 Parent Component: CYS

RESIDAA0363 , AA0493