8YUR

E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
16S rRNA---
30S ribosomal protein S4
30S ribosomal protein S6, fully modified isoform
30S ribosomal protein S7
30S ribosomal protein S9
30S ribosomal protein S10
30S ribosomal protein S11
30S ribosomal protein S12
30S ribosomal protein S13
30S ribosomal protein S14
30S ribosomal protein S16
30S ribosomal protein S17
30S ribosomal protein S18
30S ribosomal protein S19
30S ribosomal protein S20
30S ribosomal protein S21
V [auth a]23S rRNA---
W [auth b]5S rRNA---
X [auth c]50S ribosomal protein L2
Y [auth d]50S ribosomal protein L3
CA [auth h]50S ribosomal protein L9
DA [auth i]50S ribosomal protein L13
EA [auth j]50S ribosomal protein L14
FA [auth k]50S ribosomal protein L15
GA [auth l]50S ribosomal protein L16
HA [auth m]50S ribosomal protein L17
IA [auth n]50S ribosomal protein L18
KA [auth p]50S ribosomal protein L20
NA [auth s]50S ribosomal protein L23
OA [auth t]50S ribosomal protein L24
QA [auth v]50S ribosomal protein L27
RA [auth w]50S ribosomal protein L28
SA [auth x]50S ribosomal protein L29
UA [auth z]50S ribosomal protein L32
VA [auth 0]50S ribosomal protein L33
WA [auth 1]50S ribosomal protein L34
ZA [auth 4]50S ribosomal protein L31
AB [auth V]P-site tRNAGlu---
30S ribosomal protein S15
30S ribosomal protein S2
Z [auth e]50S ribosomal protein L4
AA [auth f]50S ribosomal protein L5
BA [auth g]50S ribosomal protein L6
30S ribosomal protein S3
JA [auth o]50S ribosomal protein L19
LA [auth q]50S ribosomal protein L21
MA [auth r]50S ribosomal protein L22
PA [auth u]50S ribosomal protein L25
TA [auth y]50S ribosomal protein L30
30S ribosomal protein S5
XA [auth 2]50S ribosomal protein L35
YA [auth 3]50S ribosomal protein L36
BB [auth W]mRNA---
CB [auth X]A-site tRNAIle2---
30S ribosomal protein S8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR002942RNA-binding S4 domainDomain
IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
IPR022801Small ribosomal subunit protein uS4Family
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
IPR000529Small ribosomal subunit protein bS6Family
IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
IPR000235Small ribosomal subunit protein uS7Family
IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
IPR023798Small ribosomal subunit protein uS7 domainDomain
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR000754Small ribosomal subunit protein uS9Family
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR027486Small ribosomal subunit protein uS10 domainDomain
IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
IPR001848Small ribosomal subunit protein uS10Family
IPR001971Small ribosomal subunit protein uS11Family
IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
IPR005679Ribosomal protein uS12, bacterial-typeFamily
IPR006032Small ribosomal subunit protein uS12Family
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
IPR001892Small ribosomal subunit protein uS13Family
IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
IPR001209Small ribosomal subunit protein uS14Family
IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
IPR000307Small ribosomal subunit protein bS16Family
IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR000266Small ribosomal subunit protein uS17Family
IPR001648Small ribosomal subunit protein bS18Family
IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
IPR002222Small ribosomal subunit protein uS19Family
IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
IPR002583Small ribosomal subunit protein bS20Family
IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
IPR001911Small ribosomal subunit protein bS21Family
X [auth c]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
X [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth c]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
X [auth c]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
X [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
X [auth c]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
X [auth c]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
X [auth c]IPR002171Large ribosomal subunit protein uL2Family
Y [auth d]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
Y [auth d]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
Y [auth d]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Y [auth d]IPR000597Large ribosomal subunit protein uL3Family
CA [auth h]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
CA [auth h]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
CA [auth h]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
CA [auth h]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
CA [auth h]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
CA [auth h]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
CA [auth h]IPR000244Large ribosomal subunit protein bL9Family
DA [auth i]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
DA [auth i]IPR005822Large ribosomal subunit protein uL13Family
DA [auth i]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
DA [auth i]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
EA [auth j]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
EA [auth j]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
EA [auth j]IPR000218Large ribosomal subunit protein uL14Family
EA [auth j]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
FA [auth k]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
FA [auth k]IPR021131Large ribosomal subunit protein uL15/eL18Domain
FA [auth k]IPR030878Large ribosomal subunit protein uL15Family
FA [auth k]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
FA [auth k]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
GA [auth l]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
GA [auth l]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
GA [auth l]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
GA [auth l]IPR016180Large ribosomal subunit protein uL16 domainDomain
GA [auth l]IPR047873Large ribosomal subunit protein uL16Family
HA [auth m]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
HA [auth m]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
HA [auth m]IPR000456Large ribosomal subunit protein bL17Family
IA [auth n]IPR005484Large ribosomal subunit protein uL18Family
IA [auth n]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
KA [auth p]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
KA [auth p]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
KA [auth p]IPR005813Large ribosomal subunit protein bL20Family
NA [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
NA [auth s]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
NA [auth s]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
NA [auth s]IPR013025Large ribosomal subunit protein uL23-likeFamily
OA [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
OA [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
OA [auth t]IPR003256Large ribosomal subunit protein uL24Family
OA [auth t]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
OA [auth t]IPR005824KOWDomain
OA [auth t]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
QA [auth v]IPR001684Large ribosomal subunit protein bL27Family
QA [auth v]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
RA [auth w]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
RA [auth w]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
RA [auth w]IPR026569Large ribosomal subunit protein bL28Family
RA [auth w]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
SA [auth x]IPR050063Universal ribosomal protein uL29Family
SA [auth x]IPR001854Large ribosomal subunit protein uL29Family
SA [auth x]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
SA [auth x]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
UA [auth z]IPR002677Large ribosomal subunit protein bL32Family
UA [auth z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
UA [auth z]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
VA [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
VA [auth 0]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
VA [auth 0]IPR001705Large ribosomal subunit protein bL33Family
VA [auth 0]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
WA [auth 1]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
WA [auth 1]IPR000271Large ribosomal subunit protein bL34Family
ZA [auth 4]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
ZA [auth 4]IPR027491Large ribosomal subunit protein bL31 type AFamily
ZA [auth 4]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
ZA [auth 4]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR000589Small ribosomal subunit protein uS15Family
IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IPR001865Small ribosomal subunit protein uS2Family
Z [auth e]IPR013005Large ribosomal subunit protein uL4-likeFamily
Z [auth e]IPR002136Large ribosomal subunit protein uL4Family
Z [auth e]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
AA [auth f]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
AA [auth f]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
AA [auth f]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
AA [auth f]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
AA [auth f]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
AA [auth f]IPR002132Large ribosomal subunit protein uL5Family
BA [auth g]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
BA [auth g]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
BA [auth g]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
BA [auth g]IPR000702Large ribosomal subunit protein uL6-likeFamily
BA [auth g]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IPR004087K Homology domainDomain
IPR004044K Homology domain, type 2Domain
IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
JA [auth o]IPR001857Large ribosomal subunit protein bL19Family
JA [auth o]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
JA [auth o]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
JA [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth q]IPR028909Large ribosomal subunit protein bL21-likeFamily
LA [auth q]IPR001787Large ribosomal subunit protein bL21Family
LA [auth q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
LA [auth q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
MA [auth r]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
MA [auth r]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
MA [auth r]IPR001063Large ribosomal subunit protein uL22Family
MA [auth r]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
MA [auth r]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
PA [auth u]IPR020055Ribosomal protein bL25, short-formFamily
PA [auth u]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
PA [auth u]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
PA [auth u]IPR050070Bacterial ribosomal protein bL25Family
PA [auth u]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
TA [auth y]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
TA [auth y]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
TA [auth y]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
TA [auth y]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
IPR000851Small ribosomal subunit protein uS5Family
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
XA [auth 2]IPR021137Large ribosomal subunit protein bL35-likeFamily
XA [auth 2]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
XA [auth 2]IPR001706Large ribosomal subunit protein bL35Family
XA [auth 2]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
YA [auth 3]IPR000473Large ribosomal subunit protein bL36Family
YA [auth 3]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
IPR000630Small ribosomal subunit protein uS8Family
IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
2MG Parent Component: G

4OC Parent Component: C

5MC Parent Component: C

G7M Parent Component: G

MA6 Parent Component: A

PSU Parent Component: U

UR3 Parent Component: U

IAS
D2T Parent Component: ASP

V [auth a]1MG Parent Component: G

V [auth a]2MA Parent Component: A

V [auth a]2MG Parent Component: G

V [auth a]3TD Parent Component: U

V [auth a]5MC Parent Component: C

V [auth a]5MU Parent Component: U

V [auth a]6MZ Parent Component: A

V [auth a]G7M Parent Component: G

V [auth a]H2U Parent Component: U

V [auth a]OMC Parent Component: C

V [auth a]OMG Parent Component: G

V [auth a]OMU Parent Component: U

V [auth a]PSU Parent Component: U

Y [auth d]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080
GA [auth l]4D4 Parent Component: ARG

RESIDAA0071

GA [auth l]MV6 RESIDAA0071

AB [auth V]2MA Parent Component: A

RESIDAA0071

AB [auth V]5MU Parent Component: U

RESIDAA0071

AB [auth V]PSU Parent Component: U

RESIDAA0071

AB [auth V]U8U Parent Component: U

RESIDAA0071

BB [auth W]A2M Parent Component: A

RESIDAA0071

CB [auth X]3AU Parent Component: U

RESIDAA0071

CB [auth X]5MU Parent Component: U

RESIDAA0071

CB [auth X]A1LZ3 Parent Component: U

CB [auth X]G7M Parent Component: G

RESIDAA0071

CB [auth X]H2U Parent Component: U

RESIDAA0071

CB [auth X]PSU Parent Component: U

RESIDAA0071

CB [auth X]T6A Parent Component: A

RESIDAA0071