1E79

Bovine F1-ATPase inhibited by DCCD (dicyclohexylcarbodiimide)


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1E1QPDB CODE 1E1Q, NATIVE FROZEN BOVINE MITOCHONDRIAL F1-ATPASE

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17pH 7.00
Crystal Properties
Matthews coefficientSolvent content
2.6154

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 267.2α = 90
b = 107.2β = 90
c = 135.9γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD1999-06-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.42092.20.0888.12.414009336.405
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.5368.60.3312.11.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB CODE 1E1Q, NATIVE FROZEN BOVINE MITOCHONDRIAL F1-ATPASE2.42014009392.20.2250.281RANDOM58.084
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.1
p_staggered_tor15.7
p_scangle_it3.59
p_scbond_it2.62
p_planar_tor2.6
p_mcangle_it1.77
p_mcbond_it1.0374
p_multtor_nbd0.208
p_singtor_nbd0.183
p_xyhbond_nbd0.169
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.1
p_staggered_tor15.7
p_scangle_it3.59
p_scbond_it2.62
p_planar_tor2.6
p_mcangle_it1.77
p_mcbond_it1.0374
p_multtor_nbd0.208
p_singtor_nbd0.183
p_xyhbond_nbd0.169
p_chiral_restr0.09
p_hb_or_metal_coord0.044
p_planar_d0.021
p_angle_d0.016
p_plane_restr0.015
p_bond_d0.006
p_angle_deg
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms25232
Nucleic Acid Atoms
Solvent Atoms911
Heterogen Atoms175

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
AMoREphasing