X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.8303ammonium sulfate, NaI, MES, pH 5.8, VAPOR DIFFUSION, SITTING DROP, temperature 303K
Crystal Properties
Matthews coefficientSolvent content
2.1843.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.559α = 90
b = 62.838β = 100.86
c = 107.661γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray98CCDRIGAKU JUPITER 210mirrors2001-12-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL45PX0.9SPring-8BL45PX

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.399850.03418.08261943146822
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.31.3458.60.2970.87

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.4121117891117891238590.110.1680.1680.165410.19187RANDOM15.799
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.30.47-0.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg13.124
r_scangle_it3.897
r_dihedral_angle_1_deg3.587
r_sphericity_free2.594
r_scbond_it2.464
r_sphericity_bonded1.933
r_angle_refined_deg1.736
r_mcangle_it1.705
r_rigid_bond_restr1.349
r_angle_other_deg1.347
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg13.124
r_scangle_it3.897
r_dihedral_angle_1_deg3.587
r_sphericity_free2.594
r_scbond_it2.464
r_sphericity_bonded1.933
r_angle_refined_deg1.736
r_mcangle_it1.705
r_rigid_bond_restr1.349
r_angle_other_deg1.347
r_mcbond_it1.006
r_nbtor_other0.551
r_symmetry_vdw_other0.252
r_nbd_refined0.238
r_xyhbond_nbd_refined0.189
r_nbd_other0.187
r_symmetry_hbond_refined0.178
r_symmetry_vdw_refined0.152
r_xyhbond_nbd_other0.136
r_chiral_restr0.092
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_bond_other_d0.001
r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4996
Nucleic Acid Atoms
Solvent Atoms657
Heterogen Atoms185

Software

Software
Software NamePurpose
Jupiter210data collection
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement
JUPITER210data reduction