X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1QLT 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.6277PEG4000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.5451.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.507α = 90
b = 89.466β = 90
c = 161.658γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2001-07-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X111.0EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.252098.10.0530.0539.13.2275836275836
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.251.3193.80.3040.3042.52.338255

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1QLT1.2540273390273390135098.530.125650.125650.125650.142RANDOM12.756
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.14-0.380.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.933
r_sphericity_free11.373
r_dihedral_angle_1_deg4.882
r_sphericity_bonded4.663
r_scangle_it4.586
r_scbond_it3.045
r_mcangle_it2.192
r_angle_refined_deg1.684
r_mcbond_it1.437
r_rigid_bond_restr1.358
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.933
r_sphericity_free11.373
r_dihedral_angle_1_deg4.882
r_sphericity_bonded4.663
r_scangle_it4.586
r_scbond_it3.045
r_mcangle_it2.192
r_angle_refined_deg1.684
r_mcbond_it1.437
r_rigid_bond_restr1.358
r_angle_other_deg1.355
r_nbtor_other0.322
r_nbd_refined0.243
r_symmetry_vdw_other0.221
r_symmetry_hbond_refined0.221
r_symmetry_vdw_refined0.2
r_nbd_other0.199
r_xyhbond_nbd_refined0.197
r_xyhbond_nbd_other0.16
r_chiral_restr0.109
r_bond_refined_d0.014
r_gen_planes_refined0.009
r_gen_planes_other0.009
r_bond_other_d0.001
r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14068
Nucleic Acid Atoms
Solvent Atoms4266
Heterogen Atoms403

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
REFMACrefinement
CCP4data scaling