1UQX

Ralstonia solanacearum lectin (RS-IIL) in complex with alpha-methylmannoside

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1GZT	PDB ENTRY 1GZT

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		8.2		PEG 1000, TRIS BUFFER, PH 8.2

Crystal Properties
Matthews coefficient	Solvent content
2.23	44.3

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 59.132	α = 90
b = 61.707	β = 90
c = 74.788	γ = 90

Symmetry
Space Group	I 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC CCD	TOROIDAL MIRROR	2003-07-17	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID14-2		ESRF	ID14-2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.7	28.13	96.5	0.05	10.5	4.3		15416

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.7	1.76	86.6		0.173	3.87	2.36

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 1GZT	1.7	28.17	14127	745	96.5	0.118	0.116	0.139	RANDOM	10.14

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.29			0.49		-0.2

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	6.663
r_scangle_it	4.254
r_scbond_it	2.662
r_angle_refined_deg	1.661
r_angle_other_deg	1.592
r_mcangle_it	1.559
r_mcbond_it	0.852
r_nbd_other	0.269
r_symmetry_vdw_refined	0.263
r_nbd_refined	0.238
r_symmetry_hbond_refined	0.236
r_symmetry_vdw_other	0.225
r_xyhbond_nbd_refined	0.17
r_chiral_restr	0.112
r_nbtor_other	0.095
r_metal_ion_refined	0.055
r_bond_refined_d	0.018
r_gen_planes_refined	0.007
r_bond_other_d	0.003
r_gen_planes_other	0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	817
Nucleic Acid Atoms
Solvent Atoms	178
Heterogen Atoms	15

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing