X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1JC9PDB ENTRY 1JC9

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.5751.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 97.06α = 90
b = 97.06β = 90
c = 140γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray1002004-09-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM16ESRFBM16

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8519.9694.90.0811.73.132678

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1JC92.85153144316551000.2130.210.275RANDOM35.79
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.120.561.12-1.68
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.861
r_dihedral_angle_3_deg19.221
r_dihedral_angle_4_deg17.972
r_dihedral_angle_1_deg6.634
r_scangle_it1.664
r_mcangle_it1.524
r_angle_refined_deg1.399
r_scbond_it1.109
r_mcbond_it0.902
r_nbtor_refined0.336
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10343
Nucleic Acid Atoms
Solvent Atoms90
Heterogen Atoms123

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
AMoREphasing