X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2BG1PDB ENTRY 2BG1

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1750 MH HEPES 3.2 M SODIUM CHLORIDE 0.8 M AMMONIUM SULFATE, pH 7
Crystal Properties
Matthews coefficientSolvent content
3.6966.42

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 98.54α = 90
b = 99.83β = 90
c = 152.16γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2006-02-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.684.5299.20.111.464.7465295
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.671000.364.94

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2BG12.684.5244214231599.30.2620.260.298RANDOM38.22
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.520.490.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.221
r_dihedral_angle_3_deg22.119
r_dihedral_angle_4_deg18.478
r_dihedral_angle_1_deg8.796
r_scangle_it6.51
r_scbond_it4.468
r_angle_refined_deg3.252
r_mcangle_it2.749
r_mcbond_it1.676
r_nbtor_refined0.341
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.221
r_dihedral_angle_3_deg22.119
r_dihedral_angle_4_deg18.478
r_dihedral_angle_1_deg8.796
r_scangle_it6.51
r_scbond_it4.468
r_angle_refined_deg3.252
r_mcangle_it2.749
r_mcbond_it1.676
r_nbtor_refined0.341
r_nbd_refined0.279
r_chiral_restr0.212
r_symmetry_vdw_refined0.184
r_xyhbond_nbd_refined0.171
r_symmetry_hbond_refined0.148
r_bond_refined_d0.042
r_gen_planes_refined0.014
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7099
Nucleic Acid Atoms
Solvent Atoms79
Heterogen Atoms52

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
AMoREphasing