SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | IPAP(1H, 15N)HSQC | 0.3 MM [U-13C, U-15N U-2H] RIBOSOMAL PROTEIN L11, 0.3 MM RIBOSOMAL RNA, 0.3 MM THIOSTREPTON ANTIBIOTIC, 20 MM POTASSIUM PHOSPHATE, 200 MM POTASSIUM CHLORIDE | 95% H2O/5% D2O | 220 | 6.1 | 1 atm | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE DRX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| DOCKING | FOR CHAIN A, THE INITIAL COORDINATES ARE OPTIMIZED USING RDCS. LEFT SEMI-FLEXIBLE DURING DOCKING. FOR CHAIN B, INITIAL T. MARITIMA COORDINATES ARE FROM PDB ENTRY 1MMS. LEFT SEMI-FLEXIBLE DURING DOCKING. FOR CHAIN C, THE INITIAL COORDINATES ARE FROM PDB ENTRY 1E9W. LEFT FLEXIBLE ACIDS AND NUCLEIC ACIDS WHICH DO NOT COMPLY WELL WITH THE ANTIBIOTIC IN THE CASE HERE. | HADDOCK |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | TOP-RANKED ENSEMBLE, ACCORDING TO THE AVERAGE INTERACTION ENERGY AND BURIED SURFACE AREA |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | THE RDC DATA WAS USED TO DETERMINE THE RELATIVE DOMAIN ORIENTATION OF THE L11 PROTEIN |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | HADDOCK | 2.0_DEVEL | DOMINGUEZ ET AL. |
| 2 | collection | TopSpin | 1.3 | Bruker Biospin |
| 3 | collection | XwinNMR | 3.5 | Bruker Biospin |
| 4 | processing | NMRPipe | 2.5 | Delaglio et al. |
| 5 | data analysis | Sparky | 3.112 | Goddard et al. |
| 6 | structure solution | CNS | 1.1 | Brunger et al. |
