X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.53031.7M (NH4)2SO4, 2.4% v/v PEG 400, 0.1M PIPES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 303K
Crystal Properties
Matthews coefficientSolvent content
2.0540.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.887α = 90
b = 47.887β = 90
c = 129.932γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mmmirrors2004-07-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30A0.9794ESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.555596.10.0876.211.821759
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.6493.40.1155.32991

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.562020572111896.030.173360.171930.20009RANDOM12.573
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.4-0.40.81
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.162
r_dihedral_angle_3_deg11.4
r_dihedral_angle_1_deg6.436
r_dihedral_angle_4_deg5.08
r_scangle_it2.108
r_scbond_it1.48
r_angle_refined_deg1.171
r_mcangle_it0.897
r_mcbond_it0.534
r_nbtor_refined0.308
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.162
r_dihedral_angle_3_deg11.4
r_dihedral_angle_1_deg6.436
r_dihedral_angle_4_deg5.08
r_scangle_it2.108
r_scbond_it1.48
r_angle_refined_deg1.171
r_mcangle_it0.897
r_mcbond_it0.534
r_nbtor_refined0.308
r_symmetry_hbond_refined0.257
r_nbd_refined0.205
r_symmetry_vdw_refined0.158
r_xyhbond_nbd_refined0.128
r_chiral_restr0.079
r_bond_refined_d0.007
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1280
Nucleic Acid Atoms
Solvent Atoms235
Heterogen Atoms33

Software

Software
Software NamePurpose
REFMACrefinement
Xnemodata collection
FIPBM30Adata collection
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing