X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1WMA 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.8298pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3748.15

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.636α = 90
b = 59.884β = 90
c = 87.954γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102005-09-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.11587ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.541298.50.0293.942725
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.541.5992.30.0633.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1WMA1.541240523215298.50.114810.112220.16358RANDOM13.87
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.21-0.050.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.109
r_dihedral_angle_4_deg17.942
r_sphericity_free13.407
r_dihedral_angle_3_deg12.467
r_sphericity_bonded6.305
r_scangle_it6.119
r_dihedral_angle_1_deg5.323
r_scbond_it4.654
r_mcangle_it3.491
r_rigid_bond_restr2.796
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.109
r_dihedral_angle_4_deg17.942
r_sphericity_free13.407
r_dihedral_angle_3_deg12.467
r_sphericity_bonded6.305
r_scangle_it6.119
r_dihedral_angle_1_deg5.323
r_scbond_it4.654
r_mcangle_it3.491
r_rigid_bond_restr2.796
r_mcbond_it2.641
r_angle_refined_deg2.174
r_nbtor_refined0.311
r_nbd_refined0.237
r_xyhbond_nbd_refined0.215
r_symmetry_hbond_refined0.185
r_chiral_restr0.182
r_symmetry_vdw_refined0.168
r_bond_refined_d0.029
r_gen_planes_refined0.013
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2083
Nucleic Acid Atoms
Solvent Atoms461
Heterogen Atoms77

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
AMoREphasing