2R14

Structure of morphinone reductase in complex with tetrahydroNAD


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72982.5M ammonium sulphate, 0.1M Hepes, saturating tetrahydroNAD, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.2762.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.271α = 90
b = 118.888β = 90
c = 180.708γ = 90
Symmetry
Space GroupI 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102004-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-11ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.32089.20.09712.14.212378112378118
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.31.3485.40.4932.33.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.4129481294812498589.20.15570.156960.15570.18063RANDOM16.72
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.135.23-3.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.676
r_dihedral_angle_4_deg17.92
r_dihedral_angle_3_deg12.489
r_sphericity_free9.738
r_sphericity_bonded8.683
r_dihedral_angle_1_deg6.242
r_scangle_it4.558
r_scbond_it3.437
r_mcangle_it2.267
r_rigid_bond_restr1.875
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.676
r_dihedral_angle_4_deg17.92
r_dihedral_angle_3_deg12.489
r_sphericity_free9.738
r_sphericity_bonded8.683
r_dihedral_angle_1_deg6.242
r_scangle_it4.558
r_scbond_it3.437
r_mcangle_it2.267
r_rigid_bond_restr1.875
r_angle_refined_deg1.837
r_mcbond_it1.833
r_mcbond_other1.193
r_angle_other_deg0.975
r_symmetry_vdw_other0.219
r_nbd_refined0.212
r_nbd_other0.21
r_nbtor_refined0.182
r_symmetry_vdw_refined0.177
r_xyhbond_nbd_refined0.156
r_symmetry_hbond_refined0.152
r_chiral_restr0.107
r_nbtor_other0.084
r_bond_refined_d0.017
r_gen_planes_refined0.01
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2807
Nucleic Acid Atoms
Solvent Atoms684
Heterogen Atoms78

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing