X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 184L 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1hanging drop7.12772.2M sodium-potassium phosphate, 0.05M beta-mercaptoethanol, 0.05M 2-hydroxyethyldisulfide, pH 7.1, hanging drop, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.7655.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.462α = 90
b = 60.462β = 90
c = 96.004γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110IMAGE PLATERIGAKU RAXIS IV2006-11-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.79852.3499.71949219434
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.7981.8498.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT184L1.79852.34194641940899499.710.1880.1880.1870.212RANDOM20.548
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.120.060.12-0.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.478
r_dihedral_angle_4_deg16.87
r_dihedral_angle_3_deg13.223
r_dihedral_angle_1_deg5.25
r_scangle_it3.19
r_scbond_it2.173
r_angle_refined_deg1.249
r_mcangle_it1.236
r_mcbond_it0.786
r_nbtor_refined0.303
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.478
r_dihedral_angle_4_deg16.87
r_dihedral_angle_3_deg13.223
r_dihedral_angle_1_deg5.25
r_scangle_it3.19
r_scbond_it2.173
r_angle_refined_deg1.249
r_mcangle_it1.236
r_mcbond_it0.786
r_nbtor_refined0.303
r_symmetry_hbond_refined0.207
r_nbd_refined0.197
r_symmetry_vdw_refined0.183
r_xyhbond_nbd_refined0.152
r_chiral_restr0.088
r_bond_refined_d0.014
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1285
Nucleic Acid Atoms
Solvent Atoms213
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data collection
DENZOdata reduction
SCALEPACKdata scaling
HKL-3000data scaling
REFMACphasing