2V1A

N- and C-terminal helices of oat LOV2 (404-546) are involved in light-induced signal transduction (room temperature (293K) dark structure of LOV2 (404-546))


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2V0UPDB ENTRY 2V0U

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.1542.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 35.706α = 90
b = 57.155β = 90
c = 67.395γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293CCDMARRESEARCHBENT CONICAL SI-MIRROR (RH COATED)MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-BM-CAPS14-BM-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6550970.043303.457554
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.71990.215.43.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2V0U1.6515.8315778843970.1580.1560.195RANDOM17
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.080.010.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.999
r_dihedral_angle_3_deg12.657
r_dihedral_angle_4_deg12.249
r_dihedral_angle_1_deg5.564
r_scangle_it3.541
r_scbond_it2.46
r_angle_refined_deg1.25
r_mcangle_it1.131
r_mcbond_it1.111
r_angle_other_deg0.867
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.999
r_dihedral_angle_3_deg12.657
r_dihedral_angle_4_deg12.249
r_dihedral_angle_1_deg5.564
r_scangle_it3.541
r_scbond_it2.46
r_angle_refined_deg1.25
r_mcangle_it1.131
r_mcbond_it1.111
r_angle_other_deg0.867
r_symmetry_vdw_other0.299
r_symmetry_vdw_refined0.263
r_nbd_refined0.21
r_nbd_other0.193
r_nbtor_refined0.179
r_xyhbond_nbd_refined0.142
r_symmetry_hbond_refined0.129
r_nbtor_other0.082
r_chiral_restr0.079
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1173
Nucleic Acid Atoms
Solvent Atoms143
Heterogen Atoms43

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
AMoREphasing