X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1P5HPDB ENTRY 1P5H

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.7254

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 152.716α = 90
b = 152.716β = 90
c = 99.448γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2007-09-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-2ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9556.2597.90.138.84.2808372
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.952.0699.50.532.74.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1P5H1.953076793403097.30.1680.1660.201RANDOM15.1
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.290.29-0.59
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.438
r_dihedral_angle_4_deg15.376
r_dihedral_angle_3_deg14.17
r_dihedral_angle_1_deg5.847
r_scangle_it2.236
r_scbond_it1.353
r_angle_refined_deg1.107
r_mcangle_it0.998
r_angle_other_deg0.904
r_mcbond_it0.539
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.438
r_dihedral_angle_4_deg15.376
r_dihedral_angle_3_deg14.17
r_dihedral_angle_1_deg5.847
r_scangle_it2.236
r_scbond_it1.353
r_angle_refined_deg1.107
r_mcangle_it0.998
r_angle_other_deg0.904
r_mcbond_it0.539
r_nbd_refined0.197
r_nbd_other0.185
r_symmetry_vdw_other0.184
r_nbtor_refined0.169
r_xyhbond_nbd_refined0.146
r_symmetry_hbond_refined0.131
r_symmetry_vdw_refined0.128
r_nbtor_other0.082
r_chiral_restr0.07
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6620
Nucleic Acid Atoms
Solvent Atoms957
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing