X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MSO 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.5pH 5.5
Crystal Properties
Matthews coefficientSolvent content
1.7830.48

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.03α = 90
b = 81.03β = 90
c = 33.9γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMICRO FOCUSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SASLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.224.198.80.0711.83.313231
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.398.70.215.73.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY MSO2.240.52395820998.80.2420.240.282RANDOM18.75
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.080.040.08-0.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.341
r_dihedral_angle_3_deg17.823
r_dihedral_angle_4_deg8.774
r_dihedral_angle_1_deg5.35
r_angle_other_deg1.034
r_angle_refined_deg0.97
r_scangle_it0.373
r_chiral_restr0.317
r_scbond_it0.272
r_mcangle_it0.189
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.341
r_dihedral_angle_3_deg17.823
r_dihedral_angle_4_deg8.774
r_dihedral_angle_1_deg5.35
r_angle_other_deg1.034
r_angle_refined_deg0.97
r_scangle_it0.373
r_chiral_restr0.317
r_scbond_it0.272
r_mcangle_it0.189
r_nbtor_refined0.181
r_nbd_other0.176
r_mcbond_it0.164
r_nbd_refined0.158
r_symmetry_vdw_refined0.147
r_xyhbond_nbd_refined0.106
r_symmetry_vdw_other0.092
r_nbtor_other0.086
r_symmetry_hbond_refined0.066
r_bond_refined_d0.006
r_bond_other_d0.004
r_gen_planes_refined0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms766
Nucleic Acid Atoms
Solvent Atoms66
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
AMoREphasing