2Z1S

Beta-glucosidase B from paenibacillus polymyxa complexed with cellotetraose


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529330% PEG550MME, 0.05M CL2CA, 0.1M BIS/TRIS, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2745.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.324α = 90
b = 75.283β = 90
c = 88.794γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120IMAGE PLATEMAR scanner 345 mm plateosmic2007-03-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR5711.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.45738.24298.30.1210.12154.4179361793650
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.452.5889.20.580.581.34.12322

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.4626.08179191791991399.220.2180.2180.2150.272RANDOM48.513
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.814.63-1.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.602
r_scangle_it4.133
r_scbond_it2.59
r_angle_refined_deg1.95
r_mcangle_it1.622
r_mcbond_it0.852
r_symmetry_vdw_refined0.295
r_nbd_refined0.261
r_xyhbond_nbd_refined0.181
r_chiral_restr0.179
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.602
r_scangle_it4.133
r_scbond_it2.59
r_angle_refined_deg1.95
r_mcangle_it1.622
r_mcbond_it0.852
r_symmetry_vdw_refined0.295
r_nbd_refined0.261
r_xyhbond_nbd_refined0.181
r_chiral_restr0.179
r_symmetry_hbond_refined0.128
r_bond_refined_d0.019
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3625
Nucleic Acid Atoms
Solvent Atoms123
Heterogen Atoms45

Software

Software
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
MOSFLMdata reduction
CCP4phasing