X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2HESPDB entry 2HES

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP629725% PEG 3350, 0.1M (NH4)2SO4, 0.1M Bis-tris, pH6.0, 8% 2,2,2-trifluro ethanol, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties
Matthews coefficientSolvent content
1.9235.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.682α = 90
b = 74.64β = 105.05
c = 49.481γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152008-12-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9792APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75095.70.060.0612.55.5307103071017.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7666.50.4210.4212.623.41055

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2HES1.747.78298972989779195.570.161390.161390.160460.19589RANDOM18.727
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.360.220.230.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.256
r_dihedral_angle_4_deg12.926
r_dihedral_angle_3_deg11.658
r_dihedral_angle_1_deg6.344
r_scangle_it2.825
r_scbond_it1.845
r_angle_refined_deg1.232
r_mcangle_it1.229
r_mcbond_it0.763
r_nbtor_refined0.298
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.256
r_dihedral_angle_4_deg12.926
r_dihedral_angle_3_deg11.658
r_dihedral_angle_1_deg6.344
r_scangle_it2.825
r_scbond_it1.845
r_angle_refined_deg1.232
r_mcangle_it1.229
r_mcbond_it0.763
r_nbtor_refined0.298
r_nbd_refined0.195
r_symmetry_vdw_refined0.193
r_symmetry_hbond_refined0.14
r_xyhbond_nbd_refined0.122
r_chiral_restr0.083
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2538
Nucleic Acid Atoms
Solvent Atoms392
Heterogen Atoms5

Software

Software
Software NamePurpose
HKL-3000data collection
PHASERphasing
REFMACrefinement
Cootmodel building
HKL-3000data reduction
HKL-3000data scaling