X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52914% PEG 400 (V/V), 0.1M NA-MES (SODIUM 2-(N-MORPHOLINO)-ETHANESULFONATE), 2M AMMONIUM SULFATE, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.7354.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 112.85α = 90
b = 154.92β = 90
c = 178.04γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDdynamically bendable mirror2008-02-24MSINGLE WAVELENGTH
21x-ray100PIXELPSI PILATUS 6Mdynamically bendable mirror2008-02-24MMAD
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.91984SLSX10SA
2SYNCHROTRONSLS BEAMLINE X06SA1.14000, 1.14050, 1.13010, 1.03864SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.35097.914.873.47135807
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.32.487.93.442.47

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRASTHROUGHOUT2.320.04128783682197.940.195340.193210.23537RANDOM38.517
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.32-0.09-1.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.217
r_dihedral_angle_4_deg20.052
r_dihedral_angle_3_deg15.77
r_dihedral_angle_1_deg5.351
r_scangle_it1.654
r_angle_refined_deg1.254
r_scbond_it1.043
r_mcangle_it0.648
r_mcbond_it0.412
r_nbtor_refined0.303
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.217
r_dihedral_angle_4_deg20.052
r_dihedral_angle_3_deg15.77
r_dihedral_angle_1_deg5.351
r_scangle_it1.654
r_angle_refined_deg1.254
r_scbond_it1.043
r_mcangle_it0.648
r_mcbond_it0.412
r_nbtor_refined0.303
r_nbd_refined0.186
r_symmetry_vdw_refined0.132
r_xyhbond_nbd_refined0.119
r_symmetry_hbond_refined0.088
r_chiral_restr0.08
r_bond_refined_d0.01
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms20016
Nucleic Acid Atoms
Solvent Atoms571
Heterogen Atoms768

Software

Software
Software NamePurpose
XDSdata scaling
SHARPphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling