X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2RIOPDB ENTRY 2RIO

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1hanging drop298hanging drop, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.9568.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 125.55α = 90
b = 125.55β = 90
c = 174.39γ = 120
Symmetry
Space GroupP 32 1 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 3152008-11-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.979APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.3351.26498.40.1244.62289522895

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2RIO3.3351.2622877118198.270.2640.2630.284RANDOM63.914
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.780.891.78-2.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.508
r_dihedral_angle_4_deg17.153
r_dihedral_angle_3_deg14.773
r_dihedral_angle_1_deg8.613
r_angle_other_deg4.309
r_angle_refined_deg1.507
r_scangle_it0.736
r_scbond_it0.426
r_mcangle_it0.223
r_mcbond_it0.111
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.508
r_dihedral_angle_4_deg17.153
r_dihedral_angle_3_deg14.773
r_dihedral_angle_1_deg8.613
r_angle_other_deg4.309
r_angle_refined_deg1.507
r_scangle_it0.736
r_scbond_it0.426
r_mcangle_it0.223
r_mcbond_it0.111
r_chiral_restr0.093
r_gen_planes_other0.012
r_bond_refined_d0.007
r_gen_planes_refined0.007
r_bond_other_d
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6292
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms56

Software

Software
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
PHASERphasing