X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2I5BPDB ENTRY 2I5B

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
150 MM HEPES, PH 7.6, 2M AMMONIUM SULPHATE 10MG/ML PROTEIN
Crystal Properties
Matthews coefficientSolvent content
2.2845

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.58α = 90
b = 102.34β = 90.98
c = 83.54γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS2013-05-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SASLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4545.6997.10.0515.934.51832011.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.451.5930.861.874.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2I5B1.4545.69173936926597.110.13250.130040.17811RANDOM21.437
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.79-0.46-1.060.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.433
r_sphericity_free26.463
r_dihedral_angle_4_deg22.757
r_sphericity_bonded13.697
r_dihedral_angle_3_deg11.995
r_dihedral_angle_1_deg6.119
r_rigid_bond_restr5.817
r_scangle_other5.703
r_long_range_B_refined5.583
r_scbond_it5.283
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.433
r_sphericity_free26.463
r_dihedral_angle_4_deg22.757
r_sphericity_bonded13.697
r_dihedral_angle_3_deg11.995
r_dihedral_angle_1_deg6.119
r_rigid_bond_restr5.817
r_scangle_other5.703
r_long_range_B_refined5.583
r_scbond_it5.283
r_long_range_B_other5.28
r_scbond_other4.983
r_mcangle_other4.317
r_mcangle_it4.316
r_mcbond_it3.535
r_mcbond_other3.533
r_angle_refined_deg1.802
r_angle_other_deg0.905
r_chiral_restr0.124
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8290
Nucleic Acid Atoms
Solvent Atoms992
Heterogen Atoms70

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing