X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3P9FPDB ENTRY 3P9F

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
110291PROTEIN AT 20 MG/ML IN 50 MM TRIS BUFFER, 0.3 M SODIUM AZIDE, SATURATED WITH URIC ACID, pH 10.0, BATCH METHOD - STTING DROPS, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.8158.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.858α = 90
b = 95.338β = 90
c = 104.777γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray291CCDADSC QUANTUM 315rBENT MIRROR2009-05-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30A0.982ESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9838.2397.80.0543.44.2279172672042
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.982.193.90.19519.53.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISNONEPDB ENTRY 3P9F1.9838.232279172672098.70.190.189NONE
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
72545.8
RMS Deviations
KeyRefinement Restraint Deviation
s_angle_d0.077
s_similar_adp_cmpnt0.073
s_non_zero_chiral_vol0.042
s_zero_chiral_vol0.035
s_bond_d0.034
s_anti_bump_dis_restr0.027
s_from_restr_planes0.0258
s_similar_dist
s_rigid_bond_adp_cmpnt
s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2359
Nucleic Acid Atoms
Solvent Atoms173
Heterogen Atoms13

Software

Software
Software NamePurpose
ADSCdata collection
SHELXLrefinement
SHELXL-97refinement
MOSFLMdata reduction
SCALAdata scaling
TRUNCATEdata scaling