X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8289Tris, PEG 3350, ammonium acetate, pH 8.0, vapor diffusion, hanging drop, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
238.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.31α = 78.43
b = 46.19β = 75.71
c = 66.28γ = 69.36
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray291IMAGE PLATERIGAKU RAXIS IV++2013-06-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9342.88100324593245922

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9342.8832453164792.80.17960.17680.2303RANDOM16.556
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01-0.010.010.030.04-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.785
r_dihedral_angle_4_deg17.9
r_dihedral_angle_3_deg15.766
r_dihedral_angle_1_deg6.772
r_mcangle_it1.961
r_angle_refined_deg1.902
r_mcbond_it1.279
r_mcbond_other1.272
r_angle_other_deg0.994
r_chiral_restr0.301
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.785
r_dihedral_angle_4_deg17.9
r_dihedral_angle_3_deg15.766
r_dihedral_angle_1_deg6.772
r_mcangle_it1.961
r_angle_refined_deg1.902
r_mcbond_it1.279
r_mcbond_other1.272
r_angle_other_deg0.994
r_chiral_restr0.301
r_bond_refined_d0.018
r_bond_other_d0.009
r_gen_planes_refined0.008
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4000
Nucleic Acid Atoms
Solvent Atoms425
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
CrystalCleardata collection
MOSFLMdata reduction
SCALAdata scaling
PHASESphasing