4UO4

Structure of the A_Canine_Colorado_17864_06 H3 haemagglutinin


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4UO0PDB ENTRY 4UO0

Crystallization

Crystal Properties
Matthews coefficientSolvent content
4.1870.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.405α = 90
b = 96.405β = 90
c = 347.128γ = 120
Symmetry
Space GroupP 63 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.648.299.60.0617.15.2303872
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.7499.20.6635.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4UO02.6173.5628820152999.320.200730.198530.24371RANDOM74.108
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.121.062.12-6.88
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.25
r_dihedral_angle_3_deg18.156
r_dihedral_angle_4_deg18.005
r_dihedral_angle_1_deg6.87
r_mcangle_it4.482
r_scbond_it4.099
r_mcbond_other2.99
r_mcbond_it2.989
r_angle_refined_deg1.655
r_angle_other_deg0.963
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.25
r_dihedral_angle_3_deg18.156
r_dihedral_angle_4_deg18.005
r_dihedral_angle_1_deg6.87
r_mcangle_it4.482
r_scbond_it4.099
r_mcbond_other2.99
r_mcbond_it2.989
r_angle_refined_deg1.655
r_angle_other_deg0.963
r_chiral_restr0.145
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3889
Nucleic Acid Atoms
Solvent Atoms18
Heterogen Atoms191

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing