X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4KC1 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293PEG3350 ammonium sulfate MOPS MnCl2
Crystal Properties
Matthews coefficientSolvent content
1.9336.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.84α = 90
b = 149.15β = 90
c = 80.09γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2013-07-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.954ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.342.399.60.1114.6913.277776
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.599.50.822.991326858

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4KC11.342.376190155699.640.159840.159370.18333RANDOM13.826
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.590.81-0.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.148
r_sphericity_free22.926
r_dihedral_angle_4_deg15.493
r_dihedral_angle_3_deg10.58
r_dihedral_angle_1_deg6.218
r_sphericity_bonded5.793
r_long_range_B_refined2.192
r_long_range_B_other1.596
r_rigid_bond_restr1.412
r_angle_other_deg1.322
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.148
r_sphericity_free22.926
r_dihedral_angle_4_deg15.493
r_dihedral_angle_3_deg10.58
r_dihedral_angle_1_deg6.218
r_sphericity_bonded5.793
r_long_range_B_refined2.192
r_long_range_B_other1.596
r_rigid_bond_restr1.412
r_angle_other_deg1.322
r_angle_refined_deg1.298
r_scangle_other1.134
r_scbond_it1.079
r_scbond_other1.079
r_mcangle_it0.817
r_mcangle_other0.817
r_mcbond_it0.625
r_mcbond_other0.62
r_chiral_restr0.078
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2315
Nucleic Acid Atoms
Solvent Atoms377
Heterogen Atoms55

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing