X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3FJY 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH8.52930.2 M sodium acetate trihydrate, 0.1 M TRIS hydrochloride, 30% w/v PEG 4000
Crystal Properties
Matthews coefficientSolvent content
1.9837.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.109α = 90
b = 89.5β = 99.07
c = 59.93γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2015-02-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM140.95372ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7549.3699.49.8559643
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8498.81.95

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3FJY1.7549.3656613301599.40.164340.162140.20395RANDOM31.378
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.57-0.681.890.85
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.829
r_dihedral_angle_4_deg16.836
r_dihedral_angle_3_deg15.007
r_long_range_B_refined7.561
r_long_range_B_other7.561
r_dihedral_angle_1_deg6.739
r_scangle_other5.612
r_mcangle_other3.761
r_mcangle_it3.76
r_scbond_it3.702
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.829
r_dihedral_angle_4_deg16.836
r_dihedral_angle_3_deg15.007
r_long_range_B_refined7.561
r_long_range_B_other7.561
r_dihedral_angle_1_deg6.739
r_scangle_other5.612
r_mcangle_other3.761
r_mcangle_it3.76
r_scbond_it3.702
r_scbond_other3.698
r_mcbond_it2.72
r_mcbond_other2.717
r_angle_refined_deg1.968
r_angle_other_deg0.902
r_chiral_restr0.114
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4609
Nucleic Acid Atoms
Solvent Atoms543
Heterogen Atoms83

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing