X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5MSO 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP291Co-crystals of CARmm Red domain with NADPH were obtained in 0.2 M ammonium tartrate dibasic, 20% PEG3350 (SG P21)

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.54α = 90
b = 58.95β = 105.92
c = 135.56γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2016-02-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.74130.361000.08111.73.7156520
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.741.81000.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5MSO1.74130.36148677784399.710.189640.18840.21299RANDOM41.321
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-10.081.37-0.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.715
r_dihedral_angle_4_deg15.129
r_dihedral_angle_3_deg11.93
r_long_range_B_refined7.641
r_long_range_B_other7.64
r_scangle_other6.004
r_dihedral_angle_1_deg5.779
r_scbond_it3.983
r_scbond_other3.982
r_mcangle_it3.572
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.715
r_dihedral_angle_4_deg15.129
r_dihedral_angle_3_deg11.93
r_long_range_B_refined7.641
r_long_range_B_other7.64
r_scangle_other6.004
r_dihedral_angle_1_deg5.779
r_scbond_it3.983
r_scbond_other3.982
r_mcangle_it3.572
r_mcangle_other3.572
r_mcbond_it2.674
r_mcbond_other2.662
r_angle_refined_deg1.407
r_angle_other_deg1.269
r_chiral_restr0.075
r_bond_refined_d0.009
r_bond_other_d0.006
r_gen_planes_refined0.006
r_gen_planes_other0.005
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10252
Nucleic Acid Atoms
Solvent Atoms1104
Heterogen Atoms135

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing