X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
otherSee publication

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.52910.05 to 0.3 M Li2SO4, 0.1 M Bis-Tris pH 5.5 and 15-30% (w/v) PEG 3350, ratio protein:reservoir 1:1
Crystal Properties
Matthews coefficientSolvent content
2.2445.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.648α = 90
b = 61.15β = 90.17
c = 70.079γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray80PIXELDECTRIS PILATUS3 S 6M2015-02-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.917410DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.370.0897.6154.8141049

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTSee publication1.370.08133936709797.580.148250.145910.19007RANDOM24.763
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.981.520.640.33
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free42.426
r_dihedral_angle_2_deg30.341
r_dihedral_angle_4_deg20.523
r_sphericity_bonded19.534
r_dihedral_angle_3_deg13.802
r_dihedral_angle_1_deg7.711
r_long_range_B_refined7.277
r_long_range_B_other7.276
r_scangle_other6.253
r_scbond_other5.386
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free42.426
r_dihedral_angle_2_deg30.341
r_dihedral_angle_4_deg20.523
r_sphericity_bonded19.534
r_dihedral_angle_3_deg13.802
r_dihedral_angle_1_deg7.711
r_long_range_B_refined7.277
r_long_range_B_other7.276
r_scangle_other6.253
r_scbond_other5.386
r_scbond_it5.385
r_rigid_bond_restr4.711
r_mcangle_other4.583
r_mcangle_it4.581
r_mcbond_it3.726
r_mcbond_other3.716
r_angle_refined_deg2.247
r_angle_other_deg1.444
r_chiral_restr0.184
r_bond_refined_d0.022
r_gen_planes_refined0.012
r_gen_planes_other0.005
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4672
Nucleic Acid Atoms
Solvent Atoms785
Heterogen Atoms69

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PHASERphasing